MGE detailed information
MGE type: Prophage MGE length: 16658 bp
Accession: NZ_CP019857 Location: 2565295..2581952 Organism: Clostridioides difficile strain DSM 29745 Replicon: chromosome
Accession: NZ_CP019857 Location: 2565295..2581952 Organism: Clostridioides difficile strain DSM 29745 Replicon: chromosome
Gene structure
The 5 kb flanking regions of this MGE are displayed.
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| CDIF29745_RS12375 () | 2560512..2561213 | + | 702 | WP_004454563.1 | AzlC family ABC transporter permease | - |
| CDIF29745_RS12380 () | 2561206..2561529 | + | 324 | WP_004454564.1 | AzlD domain-containing protein | - |
| CDIF29745_RS12385 () | 2561735..2563795 | - | 2061 | WP_009897457.1 | sensor histidine kinase | - |
| CDIF29745_RS12395 () | 2563991..2564683 | - | 693 | WP_004454566.1 | response regulator transcription factor | - |
| CDIF29745_RS12400 () | 2565295..2565669 | - | 375 | WP_009897458.1 | BlaI/MecI/CopY family transcriptional regulator | - |
| CDIF29745_RS12405 () | 2565888..2566121 | + | 234 | WP_003423177.1 | hypothetical protein | VF |
| CDIF29745_RS12410 () | 2566105..2566518 | + | 414 | WP_009897459.1 | hypothetical protein | - |
| CDIF29745_RS12415 () | 2566537..2566833 | + | 297 | WP_009897463.1 | hypothetical protein | - |
| CDIF29745_RS12420 () | 2567116..2567433 | + | 318 | WP_009897465.1 | hypothetical protein | - |
| CDIF29745_RS12425 () | 2567569..2568033 | + | 465 | WP_009897467.1 | hypothetical protein | - |
| CDIF29745_RS12435 () | 2568361..2568522 | - | 162 | WP_004454578.1 | hypothetical protein | - |
| CDIF29745_RS20020 () | 2568574..2569388 | - | 815 | Protein_2308 | toxin Bro | - |
| CDIF29745_RS19930 () | 2569508..2569696 | - | 189 | WP_004454585.1 | hypothetical protein | - |
| CDIF29745_RS12450 () | 2570643..2571527 | - | 885 | WP_009897481.1 | hypothetical protein | - |
| - () | 2571671..2571800 | + | 130 | NuclAT_1 | - | Antitoxin Detail |
| CDIF29745_RS12455 () | 2571721..2571873 | - | 153 | WP_004454589.1 | hypothetical protein | Toxin Detail |
| CDIF29745_RS12460 () | 2572147..2572470 | - | 324 | WP_009897482.1 | hypothetical protein | - |
| CDIF29745_RS12465 () | 2572506..2572760 | - | 255 | WP_004454592.1 | hypothetical protein | - |
| CDIF29745_RS12475 () | 2573192..2573710 | - | 519 | Protein_2314 | IS200-IS605 family transposase ISEfa4 | Transposase |
| CDIF29745_RS12480 () | 2574000..2574373 | - | 374 | Protein_2315 | BlaI/MecI/CopY family transcriptional regulator | - |
| CDIF29745_RS12485 () | 2574478..2574852 | - | 375 | WP_004454597.1 | BlaI/MecI/CopY family transcriptional regulator | - |
| CDIF29745_RS12490 () | 2575656..2576144 | + | 489 | WP_009897487.1 | prepilin-type N-terminal cleavage/methylation domain-containing protein | - |
| CDIF29745_RS12495 () | 2576533..2576703 | + | 171 | WP_021394397.1 | hypothetical protein | - |
| CDIF29745_RS12505 () | 2577180..2577369 | - | 190 | Protein_2319 | IS3 family transposase ISEfa10 | Transposase |
| CDIF29745_RS12510 () | 2577531..2577881 | + | 351 | WP_004454606.1 | DUF3796 domain-containing protein | - |
| CDIF29745_RS12515 () | 2577883..2578083 | + | 201 | WP_004454608.1 | hypothetical protein | VF |
| CDIF29745_RS12520 () | 2578406..2578582 | + | 177 | WP_009890506.1 | hypothetical protein | - |
| CDIF29745_RS12525 () | 2578807..2579007 | + | 201 | WP_003423148.1 | cold-shock protein | - |
| CDIF29745_RS12530 () | 2579642..2580454 | + | 813 | WP_004454609.1 | molybdate ABC transporter substrate-binding protein | - |
| CDIF29745_RS12535 () | 2580464..2581255 | + | 792 | WP_009897495.1 | ABC transporter permease | - |
| CDIF29745_RS12540 () | 2581257..2581952 | + | 696 | WP_009893573.1 | Vitamin B12 import ATP-binding protein BtuD | VF |
| CDIF29745_RS12545 () | 2581939..2582670 | + | 732 | WP_009897498.1 | membrane protein | - |
| CDIF29745_RS12550 () | 2582984..2583784 | + | 801 | WP_004454616.1 | PIG-L family deacetylase | - |
| CDIF29745_RS12555 () | 2584323..2585039 | + | 717 | WP_004454617.1 | response regulator transcription factor | - |
| CDIF29745_RS12560 () | 2585008..2586597 | + | 1590 | WP_009897499.1 | sensor histidine kinase | - |
Similar MGE(s)
Similar MGE(s) is defined as other TA-related MGE(s) with Mash distance < 0.01 to this MGE.
| Detail | Organism | MGE type | Related TA | Genome accession | Coordinates | Mash distance |
|---|---|---|---|---|---|---|
| Clostridium difficile 630 | Prophage | TA10176 | NC_009089 | 2658361..2675497 | 0.01 |