MGE detailed information
MGE type: Prophage MGE length: 68900 bp
Accession: NC_013315 Location: 1673422..1742321 Organism: Clostridium difficile CD196 Replicon: chromosome
Accession: NC_013315 Location: 1673422..1742321 Organism: Clostridium difficile CD196 Replicon: chromosome
Gene structure
The 5 kb flanking regions of this MGE are displayed.
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| CD196_RS07850 () | 1668527..1669288 | + | 762 | WP_009889424.1 | M48 family metallopeptidase | - |
| CD196_RS07855 () | 1669819..1670058 | + | 240 | WP_003429800.1 | ACT domain-containing protein | - |
| CD196_RS07860 () | 1670328..1671323 | + | 996 | WP_012816147.1 | ketol-acid reductoisomerase | - |
| CD196_RS07865 () | 1671376..1673064 | + | 1689 | WP_009888799.1 | biosynthetic-type acetolactate synthase large subunit | - |
| CD196_RS07870 () | 1673422..1674552 | - | 1131 | WP_003429803.1 | 34 kDa membrane antigen ; Integrase | Integrase |
| CD196_RS07875 () | 1674631..1675338 | - | 708 | WP_009888800.1 | HIRAN domain-containing protein | - |
| CD196_RS07880 () | 1675351..1676220 | - | 870 | WP_009888801.1 | HipA domain-containing protein | - |
| CD196_RS07885 () | 1676840..1677346 | - | 507 | WP_003429804.1 | ImmA/IrrE family metallo-endopeptidase | - |
| CD196_RS07890 () | 1677424..1677765 | - | 342 | WP_009904210.1 | XRE family transcriptional regulator | - |
| CD196_RS07895 () | 1678558..1678752 | + | 195 | WP_009904211.1 | hypothetical protein | - |
| CD196_RS07900 () | 1678827..1679207 | - | 381 | WP_009904212.1 | helix-turn-helix domain-containing protein | - |
| CD196_RS07905 () | 1679352..1679543 | + | 192 | WP_009904214.1 | hypothetical protein | - |
| CD196_RS07910 () | 1679555..1680328 | + | 774 | WP_009904215.1 | Bro-N domain-containing protein | - |
| CD196_RS07915 () | 1680334..1681137 | + | 804 | WP_009904216.1 | ORF6N domain-containing protein | - |
| CD196_RS07920 () | 1681109..1681786 | + | 678 | WP_003429814.1 | hypothetical protein | - |
| CD196_RS18810 () | 1681922..1682104 | + | 183 | WP_043896778.1 | hypothetical protein | - |
| CD196_RS07930 () | 1682266..1682658 | + | 393 | WP_003429816.1 | helix-turn-helix domain-containing protein | - |
| CD196_RS19470 () | 1682639..1682788 | + | 150 | WP_003429817.1 | hypothetical protein | - |
| CD196_RS07935 () | 1682859..1683296 | + | 438 | WP_003433513.1 | hypothetical protein | - |
| CD196_RS07940 () | 1683308..1684474 | + | 1167 | WP_009904222.1 | DUF2800 domain-containing protein | - |
| CD196_RS07945 () | 1684489..1684824 | + | 336 | WP_009904225.1 | hypothetical protein | - |
| CD196_RS07950 () | 1684877..1685449 | + | 573 | WP_003429822.1 | DNA-directed RNA polymerase sigma-70 factor | - |
| CD196_RS07955 () | 1685472..1686044 | + | 573 | WP_009904228.1 | DUF2815 family protein | - |
| CD196_RS07960 () | 1686044..1688002 | + | 1959 | WP_009904230.1 | DNA polymerase | - |
| CD196_RS07965 () | 1688014..1690431 | + | 2418 | WP_009904232.1 | virulence-associated E family protein | - |
| CD196_RS07970 () | 1690713..1691039 | + | 327 | WP_003433522.1 | VRR-NUC domain-containing protein | - |
| CD196_RS07975 () | 1690988..1692358 | + | 1371 | WP_009888823.1 | DEAD/DEAH box helicase | - |
| CD196_RS19710 () | 1692382..1692519 | + | 138 | WP_009888824.1 | hypothetical protein | - |
| CD196_RS07980 () | 1692512..1692991 | + | 480 | WP_009888825.1 | sigma-70 region 4 domain-containing protein | - |
| CD196_RS18940 () | 1693274..1693823 | + | 550 | Protein_1483 | Bro-N domain-containing protein | - |
| CD196_RS07990 () | 1694018..1694992 | + | 975 | WP_009888827.1 | hypothetical protein | - |
| CD196_RS19475 () | 1695013..1695522 | + | 510 | WP_003429834.1 | hypothetical protein | - |
| CD196_RS08000 () | 1695592..1696284 | + | 693 | WP_009888829.1 | helix-turn-helix domain-containing protein | - |
| CD196_RS08005 () | 1696262..1697515 | + | 1254 | WP_012816148.1 | PBSX family phage terminase large subunit | - |
| CD196_RS08010 () | 1697521..1698963 | + | 1443 | WP_009888831.1 | phage portal protein | - |
| CD196_RS08015 () | 1698953..1700488 | + | 1536 | WP_009893134.1 | minor capsid protein | - |
| CD196_RS08020 () | 1700490..1700738 | + | 249 | WP_009888832.1 | hypothetical protein | - |
| CD196_RS08025 () | 1700806..1701369 | + | 564 | WP_009888833.1 | phage scaffolding protein | - |
| CD196_RS08030 () | 1701381..1702271 | + | 891 | WP_009888834.1 | hypothetical protein | - |
| CD196_RS08035 () | 1702290..1702523 | + | 234 | WP_009888835.1 | hypothetical protein | - |
| CD196_RS08040 () | 1702533..1702934 | + | 402 | WP_009888836.1 | hypothetical protein | - |
| CD196_RS08045 () | 1702928..1703275 | + | 348 | WP_003433540.1 | hypothetical protein | - |
| CD196_RS08050 () | 1703275..1703565 | + | 291 | WP_009893135.1 | HK97 gp10 family phage protein | - |
| CD196_RS08055 () | 1703675..1704481 | + | 807 | WP_009888838.1 | hypothetical protein | - |
| CD196_RS08065 () | 1704830..1705267 | + | 438 | WP_009888839.1 | hypothetical protein | - |
| CD196_RS19715 () | 1705260..1705436 | + | 177 | WP_009888840.1 | hypothetical protein | - |
| CD196_RS08075 () | 1705437..1706747 | + | 1311 | WP_009893136.1 | phage tail sheath family protein | - |
| CD196_RS08080 () | 1706764..1707234 | + | 471 | WP_009888842.1 | phage tail tube protein | - |
| CD196_RS08085 () | 1707293..1708120 | + | 828 | WP_009888843.1 | hypothetical protein | - |
| CD196_RS08090 () | 1708192..1708632 | + | 441 | WP_003429853.1 | phage portal protein | - |
| CD196_RS19720 () | 1708973..1709134 | + | 162 | WP_003429855.1 | hypothetical protein | Toxin Detail |
| - () | 1709054..1709193 | - | 140 | NuclAT_1 | - | Antitoxin Detail |
| - () | 1709054..1709193 | - | 140 | NuclAT_2 | - | Antitoxin Detail |
| - () | 1709538..1709586 | - | 49 | NuclAT_4 | - | - |
| - () | 1709538..1709586 | - | 49 | NuclAT_5 | - | - |
| CD196_RS08100 () | 1710471..1710659 | + | 189 | WP_003429858.1 | hypothetical protein | - |
| CD196_RS08105 () | 1710778..1711644 | + | 867 | WP_009888845.1 | hypothetical protein | - |
| CD196_RS08115 () | 1712509..1713036 | + | 528 | WP_009888847.1 | DUF4352 domain-containing protein | - |
| CD196_RS08120 () | 1713174..1713941 | + | 768 | WP_009888848.1 | DUF4428 domain-containing protein | - |
| CD196_RS08125 () | 1714007..1716379 | + | 2373 | WP_009893138.1 | tape measure protein | - |
| CD196_RS08130 () | 1716396..1717085 | + | 690 | WP_009888849.1 | LysM peptidoglycan-binding domain-containing protein | - |
| CD196_RS08135 () | 1717078..1718970 | + | 1893 | WP_009893140.1 | Ecotin | VF |
| CD196_RS08140 () | 1718984..1719244 | + | 261 | WP_009893142.1 | DUF2577 domain-containing protein | - |
| CD196_RS08145 () | 1719249..1719668 | + | 420 | WP_009888851.1 | DUF2634 domain-containing protein | - |
| CD196_RS08150 () | 1719669..1720718 | + | 1050 | WP_009888852.1 | baseplate J/gp47 family protein | - |
| CD196_RS08155 () | 1720711..1721328 | + | 618 | WP_003433579.1 | YmfQ family protein | - |
| CD196_RS08160 () | 1721340..1722365 | + | 1026 | WP_009888853.1 | phage tail protein | - |
| CD196_RS08165 () | 1722382..1723908 | + | 1527 | WP_009893144.1 | hypothetical protein | - |
| CD196_RS08170 () | 1723923..1724216 | + | 294 | WP_009889429.1 | hypothetical protein | - |
| CD196_RS08175 () | 1724216..1724398 | + | 183 | WP_009889431.1 | hypothetical protein | - |
| CD196_RS08180 () | 1724432..1724998 | + | 567 | WP_009889434.1 | hypothetical protein | - |
| CD196_RS08185 () | 1725029..1725319 | + | 291 | WP_009889435.1 | hypothetical protein | - |
| CD196_RS08190 () | 1725323..1725580 | + | 258 | WP_009889440.1 | phage holin family protein | - |
| CD196_RS08195 () | 1725841..1726704 | + | 864 | WP_003429958.1 | Abi family protein | - |
| CD196_RS08200 () | 1726783..1727595 | + | 813 | WP_009889444.1 | N-acetylmuramoyl-L-alanine amidase | - |
| CD196_RS08205 () | 1727689..1730088 | + | 2400 | WP_009893147.1 | putative signaling protein | VF |
| CD196_RS08210 () | 1730129..1730314 | - | 186 | WP_003433687.1 | hypothetical protein | - |
| CD196_RS08215 () | 1731009..1731686 | + | 678 | WP_009889448.1 | manganese catalase family protein | - |
| CD196_RS08220 () | 1731860..1733896 | + | 2037 | WP_009889450.1 | thioredoxin domain-containing protein | - |
| CD196_RS08225 () | 1734087..1734653 | - | 567 | WP_009889452.1 | MarR family transcriptional regulator | - |
| CD196_RS08230 () | 1734937..1735464 | + | 528 | Protein_1530 | alpha/beta fold hydrolase | - |
| CD196_RS18955 () | 1736096..1736203 | + | 108 | WP_009889455.1 | transposase | - |
| CD196_RS08235 () | 1736205..1737322 | + | 1118 | Protein_1532 | IS200-IS605 family transposase ISBth17 | Transposase |
| CD196_RS08240 () | 1737387..1737848 | + | 462 | WP_009889460.1 | alpha/beta hydrolase | - |
| CD196_RS08245 () | 1738313..1739527 | + | 1215 | WP_009893153.1 | ISNCY family transposase ISH7A | Transposase |
| CD196_RS08250 () | 1739947..1740468 | - | 522 | WP_009889468.1 | GNAT family N-acetyltransferase | - |
| CD196_RS08255 () | 1740824..1741621 | + | 798 | WP_003436560.1 | 3D domain-containing protein | - |
| CD196_RS08260 () | 1741731..1742321 | + | 591 | WP_009893156.1 | SGNH/GDSL hydrolase family protein | - |
| CD196_RS08265 () | 1742387..1744084 | + | 1698 | WP_009893157.1 | phospho-sugar mutase | - |
| CD196_RS08270 () | 1744298..1745137 | + | 840 | WP_003436555.1 | YihY/virulence factor BrkB family protein | - |
Similar MGE(s)
Similar MGE(s) is defined as other TA-related MGE(s) with Mash distance < 0.01 to this MGE.
| Detail | Organism | MGE type | Related TA | Genome accession | Coordinates | Mash distance |
|---|---|---|---|---|---|---|
| Clostridium difficile R20291 | Prophage | TA24266 | NC_013316 | 1671047..1738184 | 0.004 |