MGE detailed information
MGE type: Prophage MGE length: 72057 bp
Accession: NZ_CP010905 Location: 1056256..1128312 Organism: Clostridioides difficile 630 Replicon: chromosome
Accession: NZ_CP010905 Location: 1056256..1128312 Organism: Clostridioides difficile 630 Replicon: chromosome
Gene structure
The 5 kb flanking regions of this MGE are displayed.
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| CDIF630_RS05105 () | 1051293..1053158 | + | 1866 | WP_003437164.1 | glycoside hydrolase family 13 protein | - |
| CDIF630_RS05110 () | 1053403..1054056 | + | 654 | WP_011860978.1 | GntR family transcriptional regulator | - |
| CDIF630_RS05115 () | 1054694..1056169 | + | 1476 | WP_011860979.1 | aminotransferase class V-fold PLP-dependent enzyme | - |
| CDIF630_RS05120 () | 1056256..1056669 | + | 414 | WP_003418655.1 | adenosylmethionine decarboxylase | - |
| CDIF630_RS05125 () | 1056699..1057550 | + | 852 | WP_009888722.1 | polyamine aminopropyltransferase | - |
| CDIF630_RS05130 () | 1057540..1058418 | + | 879 | WP_009888724.1 | agmatinase | - |
| CDIF630_RS05135 () | 1058598..1058798 | - | 201 | WP_003418660.1 | cold-shock protein | - |
| CDIF630_RS05140 () | 1059265..1060755 | + | 1491 | WP_009888725.1 | 4Fe-4S dicluster domain-containing protein | - |
| CDIF630_RS05145 () | 1061035..1062531 | + | 1497 | WP_009895925.1 | 4Fe-4S dicluster domain-containing protein | - |
| CDIF630_RS05150 () | 1062676..1063590 | + | 915 | WP_011860980.1 | ComE operon protein 3 | VF |
| CDIF630_RS05155 () | 1063708..1063899 | + | 192 | WP_003418667.1 | hypothetical protein | - |
| CDIF630_RS05160 () | 1064122..1064472 | + | 351 | WP_003437137.1 | hypothetical protein | - |
| CDIF630_RS05165 () | 1064734..1066239 | + | 1506 | WP_003437136.1 | DUF1846 domain-containing protein | - |
| CDIF630_RS05170 () | 1066629..1067726 | + | 1098 | WP_011860981.1 | DNA polymerase IV | - |
| CDIF630_RS05175 () | 1067989..1069125 | + | 1137 | WP_003437132.1 | Carnitine transport ATP-binding protein OpuCA | VF |
| CDIF630_RS05180 () | 1069118..1070665 | + | 1548 | WP_021361803.1 | ABC transporter permease subunit | - |
| CDIF630_RS05185 () | 1070999..1071865 | + | 867 | WP_003437125.1 | cation diffusion facilitator family transporter | - |
| CDIF630_RS05190 () | 1072006..1072644 | + | 639 | Protein_902 | aldo/keto reductase | - |
| CDIF630_RS05195 () | 1072798..1073916 | - | 1119 | WP_011860983.1 | Putative prophage phiRv2 integrase ; Integrase | Integrase |
| - () | 1074243..1074349 | - | 107 | NuclAT_10 | - | - |
| CDIF630_RS05200 () | 1074424..1076088 | - | 1665 | WP_011860984.1 | DUF4041 domain-containing protein | - |
| CDIF630_RS05205 () | 1076359..1077807 | - | 1449 | WP_011860985.1 | SAP domain-containing protein | - |
| CDIF630_RS05210 () | 1078455..1078787 | - | 333 | WP_011860986.1 | helix-turn-helix transcriptional regulator | - |
| CDIF630_RS05215 () | 1078949..1079137 | + | 189 | WP_011860987.1 | helix-turn-helix transcriptional regulator | - |
| CDIF630_RS05220 () | 1079171..1079965 | + | 795 | WP_011860988.1 | ORF6N domain-containing protein | - |
| CDIF630_RS05225 () | 1080027..1080227 | + | 201 | WP_011860989.1 | hypothetical protein | - |
| CDIF630_RS05230 () | 1080266..1080835 | - | 570 | WP_022583275.1 | hypothetical protein | - |
| CDIF630_RS05235 () | 1080905..1081102 | + | 198 | WP_011860991.1 | helix-turn-helix transcriptional regulator | - |
| CDIF630_RS05240 () | 1081119..1081448 | + | 330 | WP_011860992.1 | helix-turn-helix domain-containing protein | - |
| CDIF630_RS05245 () | 1081550..1081738 | + | 189 | WP_011860993.1 | hypothetical protein | - |
| CDIF630_RS05250 () | 1081754..1081966 | + | 213 | WP_022583264.1 | hypothetical protein | - |
| CDIF630_RS05255 () | 1082065..1082307 | + | 243 | WP_011860995.1 | hypothetical protein | - |
| CDIF630_RS05260 () | 1082391..1082906 | + | 516 | WP_011860996.1 | siphovirus Gp157 family protein | - |
| CDIF630_RS05265 () | 1082908..1083810 | + | 903 | WP_011860997.1 | phage recombination protein Bet | - |
| CDIF630_RS05270 () | 1083823..1084662 | + | 840 | WP_011860998.1 | hypothetical protein | - |
| CDIF630_RS05275 () | 1084733..1084987 | + | 255 | WP_011860999.1 | hypothetical protein | - |
| CDIF630_RS05280 () | 1085061..1085324 | + | 264 | WP_011861000.1 | hypothetical protein | - |
| CDIF630_RS05285 () | 1085336..1085686 | + | 351 | WP_011861001.1 | hypothetical protein | - |
| CDIF630_RS05290 () | 1085690..1086070 | + | 381 | WP_011861002.1 | hypothetical protein | - |
| CDIF630_RS20440 () | 1086039..1086200 | + | 162 | WP_021362052.1 | hypothetical protein | - |
| CDIF630_RS20165 () | 1086175..1086333 | + | 159 | WP_011861004.1 | hypothetical protein | - |
| CDIF630_RS05300 () | 1086330..1086503 | + | 174 | WP_011861005.1 | DUF3797 domain-containing protein | - |
| CDIF630_RS05310 () | 1086621..1086956 | + | 336 | WP_011861007.1 | hypothetical protein | - |
| CDIF630_RS05315 () | 1087056..1087331 | + | 276 | WP_011861008.1 | hypothetical protein | - |
| CDIF630_RS05320 () | 1087427..1088500 | + | 1074 | WP_011861009.1 | DNA cytosine methyltransferase | - |
| CDIF630_RS05325 () | 1088580..1088789 | + | 210 | WP_011861010.1 | hypothetical protein | - |
| CDIF630_RS05330 () | 1088801..1089796 | + | 996 | WP_011861011.1 | nucleoid-associated protein | - |
| CDIF630_RS05335 () | 1089805..1090530 | + | 726 | WP_011861012.1 | phosphoadenosine phosphosulfate reductase family protein | - |
| CDIF630_RS20445 () | 1090527..1090700 | + | 174 | WP_011861013.1 | hypothetical protein | - |
| CDIF630_RS05345 () | 1090693..1091064 | + | 372 | WP_011861014.1 | hypothetical protein | - |
| CDIF630_RS05350 () | 1091067..1091534 | + | 468 | WP_011861015.1 | hypothetical protein | - |
| CDIF630_RS05355 () | 1091613..1091798 | + | 186 | WP_011861016.1 | hypothetical protein | - |
| CDIF630_RS05360 () | 1091812..1092051 | + | 240 | WP_015981545.1 | hypothetical protein | - |
| CDIF630_RS05370 () | 1092180..1092986 | + | 807 | WP_011861019.1 | DNA adenine methylase | - |
| CDIF630_RS05375 () | 1093000..1093407 | + | 408 | WP_011861020.1 | RusA family crossover junction endodeoxyribonuclease | - |
| CDIF630_RS05380 () | 1093422..1094147 | + | 726 | WP_011861021.1 | phage antirepressor Ant | - |
| CDIF630_RS05385 () | 1094241..1094729 | + | 489 | WP_011861022.1 | hypothetical protein | - |
| CDIF630_RS20450 () | 1095477..1095650 | + | 174 | WP_009894739.1 | hypothetical protein | - |
| CDIF630_RS05395 () | 1095650..1096261 | + | 612 | WP_009894741.1 | hypothetical protein | - |
| CDIF630_RS05400 () | 1096338..1096526 | + | 189 | WP_009894742.1 | hypothetical protein | - |
| CDIF630_RS05405 () | 1096506..1096823 | - | 318 | WP_009894743.1 | hypothetical protein | - |
| CDIF630_RS05410 () | 1096947..1097174 | + | 228 | WP_009894744.1 | hypothetical protein | - |
| CDIF630_RS05415 () | 1097244..1097936 | + | 693 | WP_011861025.1 | helix-turn-helix domain-containing protein | - |
| CDIF630_RS05420 () | 1097914..1099167 | + | 1254 | WP_003433530.1 | PBSX family phage terminase large subunit | - |
| CDIF630_RS05425 () | 1099173..1100612 | + | 1440 | WP_011861027.1 | phage portal protein | - |
| CDIF630_RS05430 () | 1100602..1102095 | + | 1494 | WP_003429838.1 | minor capsid protein | - |
| CDIF630_RS05435 () | 1102061..1102303 | + | 243 | WP_009901430.1 | hypothetical protein | - |
| CDIF630_RS05440 () | 1102613..1103176 | + | 564 | WP_011861028.1 | phage scaffolding protein | - |
| CDIF630_RS05445 () | 1103188..1104087 | + | 900 | WP_011861029.1 | phage capsid protein | - |
| CDIF630_RS05450 () | 1104087..1104320 | + | 234 | WP_009896624.1 | hypothetical protein | - |
| CDIF630_RS05455 () | 1104330..1104731 | + | 402 | WP_009888836.1 | hypothetical protein | - |
| CDIF630_RS05460 () | 1104725..1105072 | + | 348 | WP_003429844.1 | hypothetical protein | - |
| CDIF630_RS05465 () | 1105072..1105497 | + | 426 | WP_011861030.1 | HK97 gp10 family phage protein | - |
| CDIF630_RS05470 () | 1105490..1105927 | + | 438 | WP_009901504.1 | hypothetical protein | - |
| CDIF630_RS20455 () | 1105920..1106096 | + | 177 | WP_011861031.1 | hypothetical protein | - |
| CDIF630_RS05480 () | 1106098..1107408 | + | 1311 | WP_011861032.1 | phage tail sheath family protein | - |
| CDIF630_RS05485 () | 1107425..1107895 | + | 471 | WP_003429851.1 | phage tail tube protein | - |
| CDIF630_RS05490 () | 1107967..1108407 | + | 441 | WP_003429853.1 | phage portal protein | - |
| CDIF630_RS20460 () | 1108748..1108909 | + | 162 | WP_003429855.1 | hypothetical protein | Toxin Detail |
| - () | 1108829..1108962 | - | 134 | NuclAT_5 | - | Antitoxin Detail |
| - () | 1108829..1108962 | - | 134 | NuclAT_7 | - | Antitoxin Detail |
| - () | 1109307..1109412 | - | 106 | NuclAT_11 | - | - |
| - () | 1109307..1109412 | - | 106 | NuclAT_13 | - | - |
| CDIF630_RS05505 () | 1110573..1111133 | + | 561 | WP_011861034.1 | lipoprotein | - |
| CDIF630_RS05510 () | 1111177..1111747 | + | 571 | Protein_964 | zinc-ribbon domain-containing protein | - |
| CDIF630_RS05515 () | 1111818..1114169 | + | 2352 | WP_011861036.1 | tape measure protein | - |
| CDIF630_RS05520 () | 1114185..1114874 | + | 690 | WP_011861037.1 | LysM peptidoglycan-binding domain-containing protein | - |
| CDIF630_RS05525 () | 1114867..1116837 | + | 1971 | WP_011861038.1 | Gamma-D-glutamyl-L-lysine dipeptidyl-peptidase | VF |
| CDIF630_RS05530 () | 1116851..1117111 | + | 261 | WP_009901352.1 | DUF2577 domain-containing protein | - |
| CDIF630_RS05535 () | 1117116..1117535 | + | 420 | WP_011861039.1 | DUF2634 domain-containing protein | - |
| CDIF630_RS05540 () | 1117536..1118585 | + | 1050 | WP_011861040.1 | baseplate J/gp47 family protein | - |
| CDIF630_RS05545 () | 1118578..1119195 | + | 618 | WP_011861041.1 | YmfQ family protein | - |
| CDIF630_RS05550 () | 1119207..1120010 | + | 804 | WP_011861042.1 | phage tail protein | - |
| CDIF630_RS05555 () | 1120028..1121725 | + | 1698 | WP_021413561.1 | glycine rich family protein | - |
| CDIF630_RS05560 () | 1121742..1122035 | + | 294 | WP_011861044.1 | hypothetical protein | - |
| CDIF630_RS05565 () | 1122035..1122217 | + | 183 | WP_011861045.1 | hypothetical protein | - |
| CDIF630_RS05570 () | 1122252..1122482 | + | 231 | WP_011861046.1 | hemolysin XhlA family protein | - |
| CDIF630_RS05575 () | 1122502..1122762 | + | 261 | WP_011861047.1 | phage holin family protein | - |
| CDIF630_RS05580 () | 1122759..1123574 | + | 816 | WP_011861048.1 | N-acetylmuramoyl-L-alanine amidase | - |
| CDIF630_RS05585 () | 1123591..1123887 | + | 297 | WP_011861049.1 | hypothetical protein | - |
| CDIF630_RS05590 () | 1124433..1124996 | + | 564 | WP_021371073.1 | hypothetical protein | - |
| CDIF630_RS05595 () | 1125014..1125445 | + | 432 | WP_011861052.1 | protein-export chaperone SecB | - |
| CDIF630_RS05600 () | 1125447..1126151 | + | 705 | WP_011861732.1 | hypothetical protein | - |
| CDIF630_RS05605 () | 1126399..1126587 | - | 189 | WP_009898401.1 | hypothetical protein | - |
| CDIF630_RS20465 () | 1126848..1126991 | + | 144 | WP_011861054.1 | hypothetical protein | Toxin Detail |
| - () | 1126913..1127063 | - | 151 | NuclAT_0 | - | Antitoxin Detail |
| - () | 1126917..1127063 | - | 147 | NuclAT_3 | - | - |
| CDIF630_RS05615 () | 1127605..1127886 | + | 282 | WP_009898394.1 | BlaI/MecI/CopY family transcriptional regulator | - |
| CDIF630_RS05620 () | 1127926..1128312 | + | 387 | WP_011861055.1 | BlaI/MecI/CopY family transcriptional regulator | - |
| CDIF630_RS05625 () | 1128498..1129022 | + | 525 | Protein_987 | 4Fe-4S dicluster domain-containing protein | - |
| CDIF630_RS05630 () | 1129406..1130644 | + | 1239 | WP_011861056.1 | hypothetical protein | - |
| CDIF630_RS05635 () | 1130673..1131560 | + | 888 | WP_011861057.1 | decaprenyl-phosphate phosphoribosyltransferase | - |
| CDIF630_RS05640 () | 1131594..1132223 | + | 630 | WP_011861058.1 | HAD-IB family hydrolase | - |
| CDIF630_RS05645 () | 1132228..1132692 | + | 465 | WP_003437111.1 | small multi-drug export protein | - |