MGE detailed information
MGE type: Prophage MGE length: 17632 bp
Accession: NZ_CP021445 Location: 2599384..2617015 Organism: Clostridioides difficile strain DSM 104450 Replicon: chromosome
Accession: NZ_CP021445 Location: 2599384..2617015 Organism: Clostridioides difficile strain DSM 104450 Replicon: chromosome
Gene structure
The 5 kb flanking regions of this MGE are displayed.
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| CDIF104450_RS12620 (CDIF104450_02535) | 2595905..2596606 | + | 702 | WP_004454563.1 | AzlC family ABC transporter permease | - |
| CDIF104450_RS12625 (CDIF104450_02536) | 2596599..2596922 | + | 324 | WP_004454564.1 | AzlD domain-containing protein | - |
| CDIF104450_RS12630 (CDIF104450_02537) | 2597128..2599197 | - | 2070 | WP_074037437.1 | sensor histidine kinase | - |
| CDIF104450_RS12635 (CDIF104450_02538) | 2599384..2600076 | - | 693 | WP_004454566.1 | response regulator transcription factor | - |
| CDIF104450_RS12640 (CDIF104450_02539) | 2600688..2601061 | - | 374 | Protein_2414 | BlaI/MecI/CopY family transcriptional regulator | - |
| CDIF104450_RS12645 (CDIF104450_02540) | 2601280..2601513 | + | 234 | WP_003423177.1 | helix-turn-helix transcriptional regulator | - |
| CDIF104450_RS12650 (CDIF104450_02541) | 2601497..2601910 | + | 414 | WP_021362722.1 | hypothetical protein | - |
| CDIF104450_RS12655 (CDIF104450_02542) | 2601929..2602129 | + | 201 | WP_021362723.1 | hypothetical protein | - |
| CDIF104450_RS12660 (CDIF104450_02543) | 2602507..2602824 | + | 318 | WP_004454574.1 | hypothetical protein | - |
| CDIF104450_RS12665 (CDIF104450_02544) | 2603074..2603424 | + | 351 | WP_021362724.1 | hypothetical protein | - |
| CDIF104450_RS12670 (CDIF104450_02545) | 2603753..2603914 | - | 162 | WP_004454578.1 | hypothetical protein | - |
| CDIF104450_RS12675 (CDIF104450_02546) | 2603966..2604418 | - | 453 | WP_021366820.1 | hypothetical protein | - |
| CDIF104450_RS12680 (CDIF104450_02547) | 2604415..2604780 | - | 366 | WP_016729316.1 | Bro-N domain-containing protein | - |
| CDIF104450_RS12685 (CDIF104450_02548) | 2604901..2605089 | - | 189 | WP_004454585.1 | virulence factor Srl | - |
| CDIF104450_RS12690 (CDIF104450_02549) | 2605802..2606650 | - | 849 | WP_021366818.1 | SHOCT domain-containing protein | - |
| - | 2606868..2606997 | + | 130 | - | - | Antitoxin Detail |
| CDIF104450_RS12695 (CDIF104450_02550) | 2606918..2607070 | - | 153 | WP_004454589.1 | hypothetical protein | Toxin Detail |
| CDIF104450_RS12700 (CDIF104450_02551) | 2607344..2607667 | - | 324 | WP_021366819.1 | DUF6054 family protein | - |
| CDIF104450_RS12705 (CDIF104450_02552) | 2607703..2607972 | - | 270 | WP_021366817.1 | hypothetical protein | - |
| CDIF104450_RS12710 | 2608265..2608762 | - | 498 | Protein_2428 | transposase | - |
| CDIF104450_RS12715 | 2609052..2609427 | - | 376 | Protein_2429 | BlaI/MecI/CopY family transcriptional regulator | - |
| CDIF104450_RS12720 (CDIF104450_02555) | 2609532..2609909 | - | 378 | WP_021366893.1 | BlaI/MecI/CopY family transcriptional regulator | - |
| CDIF104450_RS12725 (CDIF104450_02556) | 2610714..2611208 | + | 495 | WP_021364347.1 | prepilin-type N-terminal cleavage/methylation domain-containing protein | - |
| CDIF104450_RS12730 | 2611593..2611767 | + | 175 | Protein_2432 | hypothetical protein | - |
| CDIF104450_RS12735 (CDIF104450_02557) | 2612244..2612432 | - | 189 | WP_021366823.1 | transposase | - |
| CDIF104450_RS12740 (CDIF104450_02558) | 2612594..2612944 | + | 351 | WP_004454606.1 | DUF3796 domain-containing protein | - |
| CDIF104450_RS12745 (CDIF104450_02559) | 2612946..2613146 | + | 201 | WP_003423163.1 | helix-turn-helix transcriptional regulator | - |
| CDIF104450_RS12750 (CDIF104450_02561) | 2613469..2613645 | + | 177 | WP_009890506.1 | hypothetical protein | - |
| CDIF104450_RS12755 (CDIF104450_02562) | 2613870..2614070 | + | 201 | WP_003423148.1 | cold-shock protein | - |
| CDIF104450_RS12760 (CDIF104450_02563) | 2614705..2615517 | + | 813 | WP_004454609.1 | molybdate ABC transporter substrate-binding protein | - |
| CDIF104450_RS12765 (CDIF104450_02564) | 2615527..2616318 | + | 792 | WP_025782693.1 | ABC transporter permease | - |
| CDIF104450_RS12770 (CDIF104450_02565) | 2616320..2617015 | + | 696 | WP_009893573.1 | ATP-binding cassette domain-containing protein | - |
| CDIF104450_RS12775 (CDIF104450_02566) | 2617002..2617733 | + | 732 | WP_009890514.1 | DUF364 domain-containing protein | - |
| CDIF104450_RS12780 (CDIF104450_02567) | 2618047..2618847 | + | 801 | WP_004454616.1 | PIG-L family deacetylase | - |
| CDIF104450_RS12785 (CDIF104450_02568) | 2619387..2620103 | + | 717 | WP_021390219.1 | response regulator transcription factor | - |
| CDIF104450_RS12790 (CDIF104450_02569) | 2620072..2621664 | + | 1593 | WP_032511890.1 | sensor histidine kinase | - |
Similar MGE(s)
Similar MGE(s) is defined as other TA-related MGE(s) with Mash distance < 0.01 to this MGE.
| Detail | Organism | MGE type | Related TA | Genome accession | Coordinates | Mash distance |
|---|