MGE detailed information
MGE type: Prophage MGE length: 18289 bp
Accession: NZ_CP025047 Location: 2411049..2429337 Organism: Clostridioides difficile strain W0003a Replicon: chromosome
Accession: NZ_CP025047 Location: 2411049..2429337 Organism: Clostridioides difficile strain W0003a Replicon: chromosome
Gene structure
The 5 kb flanking regions of this MGE are displayed.
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| CWR54_RS11230 () | 2407571..2408272 | + | 702 | WP_004454563.1 | AzlC family ABC transporter permease | - |
| CWR54_RS11235 () | 2408265..2408588 | + | 324 | WP_004454564.1 | AzlD domain-containing protein | - |
| CWR54_RS11240 () | 2408793..2410853 | - | 2061 | WP_021362720.1 | sensor histidine kinase | - |
| CWR54_RS11250 () | 2411049..2411741 | - | 693 | WP_004454566.1 | Transcriptional regulatory protein WalR | VF |
| CWR54_RS11255 () | 2412353..2412727 | - | 375 | WP_009897458.1 | BlaI/MecI/CopY family transcriptional regulator | - |
| CWR54_RS11260 () | 2412946..2413179 | + | 234 | WP_003423177.1 | hypothetical protein | VF |
| CWR54_RS11265 () | 2413163..2413576 | + | 414 | WP_009897459.1 | hypothetical protein | - |
| CWR54_RS11270 () | 2413595..2413891 | + | 297 | WP_011861513.1 | hypothetical protein | - |
| CWR54_RS11275 () | 2414174..2414491 | + | 318 | WP_009897465.1 | hypothetical protein | - |
| CWR54_RS11280 () | 2414627..2415091 | + | 465 | WP_011861514.1 | hypothetical protein | - |
| CWR54_RS11290 () | 2415419..2415580 | - | 162 | WP_004454578.1 | hypothetical protein | - |
| CWR54_RS11295 () | 2415632..2416445 | - | 814 | Protein_2131 | toxin Bro | - |
| CWR54_RS18900 () | 2416565..2416717 | - | 153 | WP_021361915.1 | hypothetical protein | - |
| CWR54_RS11300 () | 2417990..2418913 | - | 924 | WP_004454587.1 | SHOCT domain-containing protein | - |
| - () | 2419057..2419186 | + | 130 | NuclAT_1 | - | Antitoxin Detail |
| CWR54_RS11305 () | 2419107..2419259 | - | 153 | WP_004454589.1 | hypothetical protein | Toxin Detail |
| CWR54_RS11310 () | 2419533..2419856 | - | 324 | WP_009897482.1 | hypothetical protein | - |
| CWR54_RS11315 () | 2419892..2420146 | - | 255 | WP_004454592.1 | hypothetical protein | - |
| CWR54_RS11325 () | 2420578..2421096 | - | 519 | Protein_2137 | IS200-IS605 family transposase ISEfa4 | Transposase |
| CWR54_RS11330 () | 2421386..2421760 | - | 375 | Protein_2138 | BlaI/MecI/CopY family transcriptional regulator | - |
| CWR54_RS11335 () | 2421865..2422239 | - | 375 | WP_004454597.1 | BlaI/MecI/CopY family transcriptional regulator | - |
| CWR54_RS11340 () | 2423043..2423531 | + | 489 | WP_004454599.1 | prepilin-type N-terminal cleavage/methylation domain-containing protein | - |
| CWR54_RS18855 () | 2423920..2424090 | + | 171 | WP_021394397.1 | hypothetical protein | - |
| CWR54_RS11355 () | 2424567..2424755 | - | 189 | WP_004454605.1 | IS3 family transposase ISEfa10 | Transposase |
| CWR54_RS11360 () | 2424917..2425267 | + | 351 | WP_004454606.1 | DUF3796 domain-containing protein | - |
| CWR54_RS11365 () | 2425269..2425469 | + | 201 | WP_004454608.1 | hypothetical protein | VF |
| CWR54_RS11370 () | 2425792..2425968 | + | 177 | WP_021362751.1 | hypothetical protein | - |
| CWR54_RS11375 () | 2426193..2426393 | + | 201 | WP_003423148.1 | cold-shock protein | - |
| CWR54_RS11380 () | 2427027..2427839 | + | 813 | WP_004454609.1 | molybdate ABC transporter substrate-binding protein | - |
| CWR54_RS11385 () | 2427849..2428640 | + | 792 | WP_021413939.1 | ABC transporter permease | - |
| CWR54_RS11390 () | 2428642..2429337 | + | 696 | WP_009893573.1 | Sulfate/thiosulfate import ATP-binding protein CysA | VF |
| CWR54_RS11395 () | 2429324..2430055 | + | 732 | WP_021361484.1 | hypothetical protein | - |
| CWR54_RS11400 () | 2430369..2431169 | + | 801 | WP_004454616.1 | PIG-L family deacetylase | - |
| CWR54_RS11405 () | 2431709..2432425 | + | 717 | WP_004454617.1 | response regulator transcription factor | - |
| CWR54_RS11410 () | 2432394..2433986 | + | 1593 | WP_021381512.1 | sensor histidine kinase | - |
Similar MGE(s)
Similar MGE(s) is defined as other TA-related MGE(s) with Mash distance < 0.01 to this MGE.
| Detail | Organism | MGE type | Related TA | Genome accession | Coordinates | Mash distance |
|---|---|---|---|---|---|---|
| Clostridium difficile 630 | Prophage | TA10176 | NC_009089 | 2658361..2675497 | 0.01 |