MGE detailed information
MGE type: Prophage MGE length: 54168 bp
Accession: NZ_CP025046 Location: 3595881..3650048 Organism: Clostridioides difficile strain W0022a Replicon: chromosome
Accession: NZ_CP025046 Location: 3595881..3650048 Organism: Clostridioides difficile strain W0022a Replicon: chromosome
Gene structure
The 5 kb flanking regions of this MGE are displayed.
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| CWR55_RS16545 () | 3591663..3592532 | - | 870 | WP_009898391.1 | FUSC family protein | - |
| CWR55_RS16550 () | 3592690..3593343 | - | 654 | WP_003432348.1 | phosphate signaling complex protein PhoU | - |
| CWR55_RS16555 () | 3593371..3594135 | - | 765 | WP_003432349.1 | phosphate ABC transporter ATP-binding protein | - |
| CWR55_RS16560 () | 3594154..3594978 | - | 825 | WP_003432350.1 | phosphate ABC transporter permease PstA | - |
| CWR55_RS16565 () | 3594980..3595897 | - | 918 | WP_021361136.1 | phosphate ABC transporter permease subunit PstC | - |
| CWR55_RS16570 () | 3596278..3596724 | - | 447 | WP_021361137.1 | hypothetical protein | - |
| CWR55_RS16575 () | 3597447..3597833 | - | 387 | WP_021366416.1 | BlaI/MecI/CopY family transcriptional regulator | - |
| CWR55_RS16580 () | 3597873..3598154 | - | 282 | WP_070538156.1 | BlaI/MecI/CopY family transcriptional regulator | - |
| - () | 3598696..3598842 | + | 147 | NuclAT_3 | - | Antitoxin Detail |
| - () | 3598696..3598846 | + | 151 | NuclAT_0 | - | - |
| CWR55_RS16585 () | 3598768..3598911 | - | 144 | WP_011861054.1 | hypothetical protein | Toxin Detail |
| CWR55_RS16590 () | 3599172..3599360 | + | 189 | WP_009898401.1 | hypothetical protein | - |
| CWR55_RS16595 () | 3599608..3600312 | - | 705 | WP_011861053.1 | hypothetical protein | - |
| CWR55_RS16600 () | 3600314..3600745 | - | 432 | WP_011861052.1 | protein-export chaperone SecB | - |
| CWR55_RS16605 () | 3600763..3601326 | - | 564 | WP_021371073.1 | hypothetical protein | - |
| CWR55_RS16610 () | 3601872..3602168 | - | 297 | WP_021371072.1 | hypothetical protein | - |
| CWR55_RS16615 () | 3602185..3603000 | - | 816 | WP_021371071.1 | N-acetylmuramoyl-L-alanine amidase | - |
| CWR55_RS16620 () | 3603000..3603257 | - | 258 | WP_021366402.1 | phage holin family protein | - |
| CWR55_RS16625 () | 3603261..3603551 | - | 291 | WP_021363500.1 | hypothetical protein | - |
| CWR55_RS16630 () | 3603582..3604148 | - | 567 | WP_021366412.1 | hypothetical protein | - |
| CWR55_RS16635 () | 3604182..3604364 | - | 183 | WP_021366413.1 | hypothetical protein | - |
| CWR55_RS16640 () | 3604364..3604657 | - | 294 | WP_074115165.1 | hypothetical protein | - |
| CWR55_RS16645 () | 3604682..3606376 | - | 1695 | WP_100852720.1 | hypothetical protein | - |
| CWR55_RS16650 () | 3606393..3607418 | - | 1026 | WP_100852721.1 | phage tail protein | - |
| CWR55_RS16655 () | 3607430..3608047 | - | 618 | WP_074090152.1 | YmfQ family protein | - |
| CWR55_RS16660 () | 3608040..3609089 | - | 1050 | WP_100852722.1 | baseplate J/gp47 family protein | - |
| CWR55_RS16665 () | 3609090..3609509 | - | 420 | WP_022583335.1 | DUF2634 domain-containing protein | - |
| CWR55_RS16670 () | 3609514..3609774 | - | 261 | WP_021434735.1 | DUF2577 domain-containing protein | - |
| CWR55_RS16675 () | 3609788..3611740 | - | 1953 | WP_022583333.1 | Gamma-D-glutamyl-L-lysine dipeptidyl-peptidase | VF |
| CWR55_RS16680 () | 3611733..3612422 | - | 690 | WP_022583336.1 | LysM peptidoglycan-binding domain-containing protein | - |
| CWR55_RS16685 () | 3612438..3614780 | - | 2343 | WP_100852723.1 | tape measure protein | - |
| CWR55_RS16690 () | 3614850..3615620 | - | 771 | WP_021434741.1 | SHOCT domain-containing protein | - |
| CWR55_RS16695 () | 3615899..3616720 | - | 822 | WP_050579201.1 | hypothetical protein | - |
| CWR55_RS16700 () | 3616847..3617017 | - | 171 | WP_021361718.1 | ribbon-helix-helix domain-containing protein | - |
| - () | 3617302..3617441 | + | 140 | NuclAT_7 | - | Antitoxin Detail |
| - () | 3617302..3617441 | + | 140 | NuclAT_8 | - | Antitoxin Detail |
| CWR55_RS19875 () | 3617361..3617522 | - | 162 | WP_009901465.1 | hypothetical protein | Toxin Detail |
| CWR55_RS16710 () | 3617843..3618283 | - | 441 | WP_021360957.1 | phage XkdN-like family protein | - |
| CWR55_RS16715 () | 3618288..3618545 | - | 258 | WP_015984846.1 | hypothetical protein | - |
| CWR55_RS16720 () | 3618598..3619068 | - | 471 | WP_015984845.1 | phage tail tube protein | - |
| CWR55_RS16725 () | 3619090..3620400 | - | 1311 | WP_074108958.1 | phage tail sheath family protein | - |
| CWR55_RS16730 () | 3620401..3620577 | - | 177 | WP_021416562.1 | hypothetical protein | - |
| CWR55_RS16735 () | 3620570..3621007 | - | 438 | WP_042741663.1 | hypothetical protein | - |
| CWR55_RS16740 () | 3621000..3621425 | - | 426 | WP_009896626.1 | HK97 gp10 family phage protein | - |
| CWR55_RS16745 () | 3621425..3621787 | - | 363 | WP_021379430.1 | hypothetical protein | - |
| CWR55_RS16750 () | 3621787..3622131 | - | 345 | WP_021371051.1 | phage head-tail connector protein | - |
| CWR55_RS16755 () | 3622142..3623161 | - | 1020 | WP_021371050.1 | major capsid protein | - |
| CWR55_RS16760 () | 3623173..3623553 | - | 381 | WP_021379431.1 | hypothetical protein | - |
| CWR55_RS16765 () | 3623569..3624141 | - | 573 | WP_021379426.1 | phage scaffolding protein | - |
| CWR55_RS16770 () | 3624188..3624418 | - | 231 | WP_021379428.1 | hypothetical protein | - |
| CWR55_RS16775 () | 3624469..3624741 | - | 273 | WP_021379429.1 | hypothetical protein | - |
| CWR55_RS16780 () | 3624988..3625248 | - | 261 | Protein_3201 | hypothetical protein | - |
| CWR55_RS16790 () | 3625565..3626590 | - | 1026 | Protein_3202 | minor capsid protein | - |
| CWR55_RS16795 () | 3626580..3627980 | - | 1401 | WP_042741666.1 | phage portal protein | - |
| CWR55_RS16800 () | 3627985..3629253 | - | 1269 | WP_181161974.1 | PBSX family phage terminase large subunit | - |
| CWR55_RS16805 () | 3629231..3629923 | - | 693 | WP_011861025.1 | helix-turn-helix domain-containing protein | - |
| CWR55_RS16810 () | 3629993..3630220 | - | 228 | WP_009894744.1 | hypothetical protein | - |
| CWR55_RS16815 () | 3630344..3630661 | + | 318 | WP_009894743.1 | hypothetical protein | - |
| CWR55_RS16820 () | 3630641..3630829 | - | 189 | WP_009894742.1 | hypothetical protein | - |
| CWR55_RS16825 () | 3630906..3631517 | - | 612 | WP_009894741.1 | hypothetical protein | - |
| CWR55_RS16830 () | 3631517..3631690 | - | 174 | WP_009894739.1 | hypothetical protein | - |
| CWR55_RS16835 () | 3632438..3632926 | - | 489 | WP_011861022.1 | hypothetical protein | - |
| CWR55_RS16840 () | 3633020..3633745 | - | 726 | WP_011861021.1 | phage antirepressor Ant | - |
| CWR55_RS16845 () | 3633760..3634167 | - | 408 | WP_011861020.1 | RusA family crossover junction endodeoxyribonuclease | - |
| CWR55_RS16850 () | 3634181..3634987 | - | 807 | WP_011861019.1 | DNA adenine methylase | - |
| CWR55_RS16860 () | 3635116..3635355 | - | 240 | WP_015981545.1 | hypothetical protein | - |
| CWR55_RS16865 () | 3635369..3635554 | - | 186 | WP_011861016.1 | hypothetical protein | - |
| CWR55_RS16870 () | 3635633..3636100 | - | 468 | WP_011861015.1 | hypothetical protein | - |
| CWR55_RS16875 () | 3636103..3636474 | - | 372 | WP_011861014.1 | hypothetical protein | - |
| CWR55_RS16880 () | 3636467..3636640 | - | 174 | WP_011861013.1 | hypothetical protein | - |
| CWR55_RS16885 () | 3636637..3637362 | - | 726 | WP_100852725.1 | phosphoadenosine phosphosulfate reductase family protein | - |
| CWR55_RS16890 () | 3637371..3638366 | - | 996 | WP_100852726.1 | nucleoid-associated protein | - |
| CWR55_RS16895 () | 3638378..3638587 | - | 210 | WP_011861010.1 | hypothetical protein | - |
| CWR55_RS16900 () | 3638677..3639750 | - | 1074 | WP_021418808.1 | DNA cytosine methyltransferase | - |
| CWR55_RS16905 () | 3639846..3640121 | - | 276 | WP_022583271.1 | hypothetical protein | - |
| CWR55_RS19880 () | 3640173..3640331 | - | 159 | WP_022583259.1 | hypothetical protein | - |
| CWR55_RS16915 () | 3640450..3640623 | - | 174 | WP_022583269.1 | DUF3797 domain-containing protein | - |
| CWR55_RS16920 () | 3640620..3640760 | - | 141 | WP_021359694.1 | hypothetical protein | - |
| CWR55_RS16925 () | 3640729..3641109 | - | 381 | WP_021395556.1 | NUMOD1 domain protein | - |
| CWR55_RS16930 () | 3641114..3641386 | - | 273 | WP_021395565.1 | hypothetical protein | - |
| CWR55_RS16935 () | 3641460..3641867 | - | 408 | WP_074124550.1 | single-stranded DNA-binding protein | - |
| CWR55_RS16940 () | 3641883..3642056 | - | 174 | WP_011861749.1 | resolvase | - |
| CWR55_RS16945 () | 3642115..3642996 | - | 882 | WP_074124549.1 | DnaD domain protein | - |
| CWR55_RS16950 () | 3643011..3643595 | - | 585 | WP_074105726.1 | ERF family protein | - |
| CWR55_RS16955 () | 3643605..3644114 | - | 510 | WP_021403371.1 | siphovirus Gp157 family protein | - |
| CWR55_RS16960 () | 3644197..3644442 | - | 246 | WP_021403370.1 | hypothetical protein | - |
| CWR55_RS16965 () | 3644748..3645077 | - | 330 | WP_021435090.1 | helix-turn-helix domain-containing protein | - |
| CWR55_RS16970 () | 3645147..3645938 | - | 792 | WP_009894678.1 | ORF6N domain-containing protein | - |
| CWR55_RS16975 () | 3645976..3646179 | - | 204 | WP_022616853.1 | helix-turn-helix transcriptional regulator | - |
| CWR55_RS16980 () | 3646345..3646719 | + | 375 | WP_022616852.1 | helix-turn-helix domain-containing protein | - |
| CWR55_RS16985 () | 3647390..3647587 | + | 198 | WP_074136284.1 | type II toxin-antitoxin system HicA family toxin | - |
| CWR55_RS16990 () | 3647626..3648027 | + | 402 | WP_074136283.1 | type II toxin-antitoxin system HicB family antitoxin | - |
| CWR55_RS16995 () | 3648099..3649217 | + | 1119 | WP_074436252.1 | Putative prophage phiRv2 integrase ; Integrase | Integrase |
| CWR55_RS17000 () | 3649368..3650048 | - | 681 | WP_003432361.1 | response regulator transcription factor | - |
| CWR55_RS17005 () | 3650098..3652113 | - | 2016 | WP_021364827.1 | sensor histidine kinase | - |
| CWR55_RS17010 () | 3652185..3652862 | - | 678 | WP_003417201.1 | response regulator transcription factor | - |
| CWR55_RS17015 () | 3653758..3654600 | - | 843 | WP_004454000.1 | phosphate ABC transporter substrate-binding protein | - |
Similar MGE(s)
Similar MGE(s) is defined as other TA-related MGE(s) with Mash distance < 0.01 to this MGE.
| Detail | Organism | MGE type | Related TA | Genome accession | Coordinates | Mash distance |
|---|