MGE detailed information
MGE type: Prophage MGE length: 66438 bp
Accession: NZ_CP026595 Location: 1684744..1751181 Organism: Clostridioides difficile strain 12-00011 Replicon: chromosome
Accession: NZ_CP026595 Location: 1684744..1751181 Organism: Clostridioides difficile strain 12-00011 Replicon: chromosome
Gene structure
The 5 kb flanking regions of this MGE are displayed.
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| C3350_RS08105 () | 1679849..1680610 | + | 762 | WP_009889424.1 | M48 family metallopeptidase | - |
| C3350_RS08110 () | 1681141..1681380 | + | 240 | WP_003429800.1 | ACT domain-containing protein | - |
| C3350_RS08115 () | 1681650..1682645 | + | 996 | WP_012816147.1 | ketol-acid reductoisomerase | - |
| C3350_RS08120 () | 1682698..1684386 | + | 1689 | WP_009888799.1 | biosynthetic-type acetolactate synthase large subunit | - |
| C3350_RS08125 () | 1684744..1685874 | - | 1131 | WP_003429803.1 | Putative prophage phiRv2 integrase ; Integrase | Integrase |
| C3350_RS08130 () | 1685953..1686660 | - | 708 | WP_009888800.1 | HIRAN domain-containing protein | - |
| C3350_RS08135 () | 1686673..1687542 | - | 870 | WP_009888801.1 | HipA domain-containing protein | - |
| C3350_RS08140 () | 1688162..1688668 | - | 507 | WP_003429804.1 | ImmA/IrrE family metallo-endopeptidase | - |
| C3350_RS08145 () | 1688744..1689292 | - | 549 | WP_009893126.1 | helix-turn-helix domain-containing protein | - |
| C3350_RS08150 () | 1689304..1689645 | - | 342 | WP_009888806.1 | XRE family transcriptional regulator | - |
| C3350_RS08155 () | 1689822..1690025 | + | 204 | WP_009893129.1 | helix-turn-helix domain-containing protein | - |
| C3350_RS08160 () | 1690073..1690882 | + | 810 | WP_009888810.1 | phage antirepressor | - |
| C3350_RS08165 () | 1690929..1691138 | + | 210 | WP_009888812.1 | hypothetical protein | - |
| C3350_RS08170 () | 1691148..1691522 | - | 375 | WP_003433505.1 | hypothetical protein | - |
| C3350_RS08175 () | 1691598..1691795 | + | 198 | WP_009888813.1 | helix-turn-helix transcriptional regulator | - |
| C3350_RS08180 () | 1691826..1692218 | + | 393 | WP_009888815.1 | helix-turn-helix domain-containing protein | - |
| C3350_RS19240 () | 1692199..1692348 | + | 150 | WP_003429817.1 | hypothetical protein | - |
| C3350_RS08185 () | 1692419..1692856 | + | 438 | WP_003433513.1 | hypothetical protein | - |
| C3350_RS08190 () | 1692868..1694034 | + | 1167 | WP_009888818.1 | DUF2800 domain-containing protein | - |
| C3350_RS08195 () | 1694049..1694384 | + | 336 | WP_009888819.1 | hypothetical protein | - |
| C3350_RS08200 () | 1694437..1695009 | + | 573 | WP_003429822.1 | DNA-directed RNA polymerase sigma-70 factor | - |
| C3350_RS08205 () | 1695032..1695604 | + | 573 | WP_003433516.1 | DUF2815 family protein | - |
| C3350_RS08210 () | 1695604..1697562 | + | 1959 | WP_009888821.1 | DNA polymerase | - |
| C3350_RS08215 () | 1697574..1699991 | + | 2418 | WP_009888822.1 | virulence-associated E family protein | - |
| C3350_RS08220 () | 1700273..1700599 | + | 327 | WP_003433522.1 | VRR-NUC domain-containing protein | - |
| C3350_RS08225 () | 1700548..1701918 | + | 1371 | WP_009888823.1 | DEAD/DEAH box helicase | - |
| C3350_RS19330 () | 1701942..1702079 | + | 138 | WP_009888824.1 | hypothetical protein | - |
| C3350_RS08230 () | 1702072..1702551 | + | 480 | WP_009888825.1 | sigma-70 region 4 domain-containing protein | - |
| C3350_RS08235 () | 1702834..1703383 | + | 550 | Protein_1483 | Bro-N domain-containing protein | - |
| C3350_RS08240 () | 1703578..1704552 | + | 975 | WP_009888827.1 | hypothetical protein | - |
| C3350_RS19245 () | 1704573..1705082 | + | 510 | WP_003429834.1 | hypothetical protein | - |
| C3350_RS08255 () | 1705152..1705844 | + | 693 | WP_009888829.1 | helix-turn-helix domain-containing protein | - |
| C3350_RS08260 () | 1705822..1707075 | + | 1254 | WP_012816148.1 | PBSX family phage terminase large subunit | - |
| C3350_RS08265 () | 1707081..1708523 | + | 1443 | WP_009888831.1 | phage portal protein | - |
| C3350_RS08270 () | 1708513..1710048 | + | 1536 | WP_009893134.1 | minor capsid protein | - |
| C3350_RS08275 () | 1710050..1710298 | + | 249 | WP_009888832.1 | hypothetical protein | - |
| C3350_RS08280 () | 1710366..1710929 | + | 564 | WP_009888833.1 | phage scaffolding protein | - |
| C3350_RS08285 () | 1710941..1711831 | + | 891 | WP_009888834.1 | hypothetical protein | - |
| C3350_RS08290 () | 1711850..1712083 | + | 234 | WP_009888835.1 | hypothetical protein | - |
| C3350_RS08295 () | 1712093..1712494 | + | 402 | WP_009888836.1 | hypothetical protein | - |
| C3350_RS08300 () | 1712488..1712835 | + | 348 | WP_003433540.1 | hypothetical protein | - |
| C3350_RS08305 () | 1712835..1713125 | + | 291 | WP_009893135.1 | HK97 gp10 family phage protein | - |
| C3350_RS08310 () | 1713235..1714041 | + | 807 | WP_009888838.1 | hypothetical protein | - |
| C3350_RS08315 () | 1714390..1714827 | + | 438 | WP_009888839.1 | hypothetical protein | - |
| C3350_RS08320 () | 1714820..1714996 | + | 177 | WP_009888840.1 | hypothetical protein | - |
| C3350_RS08325 () | 1714997..1716307 | + | 1311 | WP_009893136.1 | phage tail sheath family protein | - |
| C3350_RS08330 () | 1716324..1716794 | + | 471 | WP_009888842.1 | phage tail tube protein | - |
| C3350_RS08335 () | 1716853..1717680 | + | 828 | WP_009888843.1 | hypothetical protein | - |
| C3350_RS08340 () | 1717752..1718192 | + | 441 | WP_003429853.1 | phage portal protein | - |
| C3350_RS08350 () | 1718533..1718694 | + | 162 | WP_003429855.1 | hypothetical protein | Toxin Detail |
| - () | 1718614..1718753 | - | 140 | NuclAT_1 | - | Antitoxin Detail |
| - () | 1718614..1718753 | - | 140 | NuclAT_2 | - | Antitoxin Detail |
| - () | 1719098..1719146 | - | 49 | NuclAT_4 | - | - |
| - () | 1719098..1719146 | - | 49 | NuclAT_5 | - | - |
| C3350_RS08355 () | 1720031..1720219 | + | 189 | WP_003429858.1 | hypothetical protein | - |
| C3350_RS08360 () | 1720338..1721204 | + | 867 | WP_009888845.1 | hypothetical protein | - |
| C3350_RS08370 () | 1722069..1722596 | + | 528 | WP_009888847.1 | DUF4352 domain-containing protein | - |
| C3350_RS08375 () | 1722734..1723501 | + | 768 | WP_009888848.1 | DUF4428 domain-containing protein | - |
| C3350_RS08380 () | 1723567..1725939 | + | 2373 | WP_009893138.1 | tape measure protein | - |
| C3350_RS08385 () | 1725956..1726645 | + | 690 | WP_009888849.1 | LysM peptidoglycan-binding domain-containing protein | - |
| C3350_RS08390 () | 1726638..1728530 | + | 1893 | WP_009893140.1 | Gamma-D-glutamyl-L-lysine dipeptidyl-peptidase | VF |
| C3350_RS08395 () | 1728544..1728804 | + | 261 | WP_009893142.1 | DUF2577 domain-containing protein | - |
| C3350_RS08400 () | 1728809..1729228 | + | 420 | WP_009888851.1 | DUF2634 domain-containing protein | - |
| C3350_RS08405 () | 1729229..1730278 | + | 1050 | WP_009888852.1 | baseplate J/gp47 family protein | - |
| C3350_RS08410 () | 1730271..1730888 | + | 618 | WP_003433579.1 | YmfQ family protein | - |
| C3350_RS08415 () | 1730900..1731925 | + | 1026 | WP_009888853.1 | phage tail protein | - |
| C3350_RS08420 () | 1731942..1733468 | + | 1527 | WP_009893144.1 | hypothetical protein | - |
| C3350_RS08425 () | 1733483..1733776 | + | 294 | WP_009889429.1 | hypothetical protein | - |
| C3350_RS08430 () | 1733776..1733958 | + | 183 | WP_009889431.1 | hypothetical protein | - |
| C3350_RS08435 () | 1733992..1734558 | + | 567 | WP_009889434.1 | hypothetical protein | - |
| C3350_RS08440 () | 1734589..1734879 | + | 291 | WP_009889435.1 | hypothetical protein | - |
| C3350_RS08445 () | 1734883..1735140 | + | 258 | WP_009889440.1 | phage holin family protein | - |
| C3350_RS08450 () | 1735401..1736264 | + | 864 | WP_003429958.1 | Abi family protein | - |
| C3350_RS08455 () | 1736343..1737155 | + | 813 | WP_009889444.1 | N-acetylmuramoyl-L-alanine amidase | - |
| C3350_RS08460 () | 1737249..1739648 | + | 2400 | WP_009893147.1 | N-acetylmuramoyl-L-alanine amidase LytC | VF |
| C3350_RS08465 () | 1739689..1739874 | - | 186 | WP_003433687.1 | hypothetical protein | - |
| C3350_RS08470 () | 1740569..1741246 | + | 678 | WP_009889448.1 | manganese catalase family protein | - |
| C3350_RS08475 () | 1741420..1743456 | + | 2037 | WP_009889450.1 | thioredoxin domain-containing protein | - |
| C3350_RS08480 () | 1743647..1744213 | - | 567 | WP_009889452.1 | MarR family transcriptional regulator | - |
| C3350_RS08485 () | 1744497..1745024 | + | 528 | Protein_1530 | alpha/beta fold hydrolase | - |
| C3350_RS08495 () | 1745656..1745763 | + | 108 | WP_009889455.1 | transposase | - |
| C3350_RS08500 () | 1745765..1746882 | + | 1118 | Protein_1532 | IS200-IS605 family transposase ISBth17 | Transposase |
| C3350_RS08505 () | 1746947..1747408 | + | 462 | WP_009889460.1 | alpha/beta hydrolase | - |
| C3350_RS08510 () | 1747873..1749087 | + | 1215 | WP_009893153.1 | ISNCY family transposase ISH7A | Transposase |
| C3350_RS08515 () | 1749507..1750028 | - | 522 | WP_009889468.1 | GNAT family N-acetyltransferase | - |
| C3350_RS08520 () | 1750384..1751181 | + | 798 | WP_003436560.1 | 3D domain-containing protein | - |
| C3350_RS08525 () | 1751291..1751881 | + | 591 | WP_009893156.1 | SGNH/GDSL hydrolase family protein | - |
| C3350_RS08530 () | 1751947..1753644 | + | 1698 | WP_009893157.1 | phospho-sugar mutase | - |
| C3350_RS08535 () | 1753858..1754697 | + | 840 | WP_003436555.1 | YihY/virulence factor BrkB family protein | - |
Similar MGE(s)
Similar MGE(s) is defined as other TA-related MGE(s) with Mash distance < 0.01 to this MGE.
| Detail | Organism | MGE type | Related TA | Genome accession | Coordinates | Mash distance |
|---|---|---|---|---|---|---|
| Clostridium difficile R20291 | Prophage | TA24266 | NC_013316 | 1671047..1738184 | 0 |