MGE detailed information
MGE type: Prophage MGE length: 67670 bp
Accession: NZ_CP021445 Location: 1149304..1216973 Organism: Clostridioides difficile strain DSM 104450 Replicon: chromosome
Accession: NZ_CP021445 Location: 1149304..1216973 Organism: Clostridioides difficile strain DSM 104450 Replicon: chromosome
Gene structure
The 5 kb flanking regions of this MGE are displayed.
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| CDIF104450_RS05490 (CDIF104450_01095) | 1145553..1146875 | - | 1323 | WP_009888874.1 | polysaccharide biosynthesis protein | - |
| CDIF104450_RS05495 (CDIF104450_01096) | 1146926..1147720 | - | 795 | WP_021390121.1 | histidinol-phosphatase HisJ family protein | - |
| CDIF104450_RS05500 (CDIF104450_01097) | 1147830..1149275 | + | 1446 | WP_009896029.1 | PLP-dependent aminotransferase family protein | - |
| CDIF104450_RS05505 (CDIF104450_01098) | 1149304..1149513 | + | 210 | WP_003418943.1 | DUF896 domain-containing protein | - |
| CDIF104450_RS05510 (CDIF104450_01099) | 1149533..1150927 | + | 1395 | WP_003437993.1 | aminopeptidase | - |
| CDIF104450_RS05515 (CDIF104450_01100) | 1151167..1151382 | + | 216 | WP_021361296.1 | winged helix-turn-helix domain-containing protein | - |
| CDIF104450_RS05520 (CDIF104450_01101) | 1151461..1152627 | - | 1167 | WP_021361295.1 | site-specific integrase | - |
| CDIF104450_RS05525 (CDIF104450_01102) | 1152765..1152971 | - | 207 | WP_021361292.1 | hypothetical protein | - |
| CDIF104450_RS05530 (CDIF104450_01103) | 1153030..1153251 | - | 222 | WP_015984870.1 | helix-turn-helix transcriptional regulator | - |
| CDIF104450_RS05535 | 1153535..1153672 | + | 138 | WP_021362425.1 | hypothetical protein | - |
| CDIF104450_RS05540 (CDIF104450_01104) | 1153709..1154104 | - | 396 | WP_015984871.1 | helix-turn-helix transcriptional regulator | - |
| CDIF104450_RS05545 (CDIF104450_01105) | 1154283..1154516 | + | 234 | WP_021362426.1 | DUF739 family protein | - |
| CDIF104450_RS05550 (CDIF104450_01106) | 1154516..1155304 | + | 789 | WP_015984873.1 | phage regulatory protein | - |
| CDIF104450_RS05555 (CDIF104450_01107) | 1155361..1155498 | + | 138 | WP_021396637.1 | hypothetical protein | - |
| CDIF104450_RS05560 (CDIF104450_01108) | 1155510..1155677 | - | 168 | WP_021396640.1 | Arc family DNA-binding protein | - |
| CDIF104450_RS05565 (CDIF104450_01109) | 1155800..1155976 | + | 177 | WP_021396644.1 | toxin-antitoxin system HicB family antitoxin | - |
| CDIF104450_RS05570 (CDIF104450_01110) | 1155969..1156607 | + | 639 | WP_015984876.1 | BRO family protein | - |
| CDIF104450_RS05575 (CDIF104450_01111) | 1156666..1157046 | + | 381 | WP_015984877.1 | hypothetical protein | - |
| CDIF104450_RS05580 | 1157036..1157188 | - | 153 | WP_015984878.1 | hypothetical protein | - |
| CDIF104450_RS05585 (CDIF104450_01112) | 1157247..1157444 | + | 198 | WP_015984879.1 | helix-turn-helix transcriptional regulator | - |
| CDIF104450_RS05590 (CDIF104450_01113) | 1157483..1157917 | + | 435 | WP_021368259.1 | helix-turn-helix domain-containing protein | - |
| CDIF104450_RS05595 (CDIF104450_01114) | 1158045..1158233 | + | 189 | WP_021368261.1 | hypothetical protein | - |
| CDIF104450_RS05600 (CDIF104450_01115) | 1158265..1158408 | + | 144 | WP_021362431.1 | hypothetical protein | - |
| CDIF104450_RS05605 (CDIF104450_01117) | 1158681..1158839 | + | 159 | WP_015984882.1 | Arc family DNA-binding protein | - |
| CDIF104450_RS05610 (CDIF104450_01118) | 1158839..1159066 | + | 228 | WP_009894686.1 | hypothetical protein | - |
| CDIF104450_RS05615 (CDIF104450_01119) | 1159164..1159478 | + | 315 | WP_015984883.1 | hypothetical protein | - |
| CDIF104450_RS05620 (CDIF104450_01120) | 1159562..1160071 | + | 510 | WP_015984884.1 | siphovirus Gp157 family protein | - |
| CDIF104450_RS05625 (CDIF104450_01121) | 1160081..1160689 | + | 609 | WP_015984885.1 | ERF family protein | - |
| CDIF104450_RS05630 (CDIF104450_01122) | 1160690..1161580 | + | 891 | WP_015984886.1 | DnaD domain protein | - |
| CDIF104450_RS05635 (CDIF104450_01123) | 1161641..1161814 | + | 174 | WP_015984887.1 | hypothetical protein | - |
| CDIF104450_RS05640 (CDIF104450_01124) | 1161830..1162237 | + | 408 | WP_015981535.1 | single-stranded DNA-binding protein | - |
| CDIF104450_RS05645 (CDIF104450_01125) | 1162311..1162814 | + | 504 | WP_021376917.1 | hypothetical protein | - |
| CDIF104450_RS05650 (CDIF104450_01126) | 1162828..1163193 | + | 366 | WP_015984889.1 | hypothetical protein | - |
| CDIF104450_RS05655 (CDIF104450_01127) | 1163193..1163327 | + | 135 | WP_015984890.1 | hypothetical protein | - |
| CDIF104450_RS05660 (CDIF104450_01128) | 1163311..1163646 | + | 336 | WP_015994376.1 | hypothetical protein | - |
| CDIF104450_RS05665 (CDIF104450_01129) | 1163754..1164827 | + | 1074 | WP_011861009.1 | DNA cytosine methyltransferase | - |
| CDIF104450_RS05670 (CDIF104450_01130) | 1164907..1165116 | + | 210 | WP_015984893.1 | hypothetical protein | - |
| CDIF104450_RS05675 (CDIF104450_01131) | 1165128..1166132 | + | 1005 | WP_015984894.1 | nucleoid-associated protein | - |
| CDIF104450_RS05680 (CDIF104450_01132) | 1166214..1166543 | + | 330 | WP_015994378.1 | hypothetical protein | - |
| CDIF104450_RS05685 (CDIF104450_01133) | 1166580..1166951 | + | 372 | WP_015994379.1 | hypothetical protein | - |
| CDIF104450_RS05690 (CDIF104450_01134) | 1166954..1167136 | + | 183 | WP_015994380.1 | hypothetical protein | - |
| CDIF104450_RS05695 (CDIF104450_01135) | 1167216..1167557 | + | 342 | WP_021378977.1 | peptide chain release factor-like protein | - |
| CDIF104450_RS05700 (CDIF104450_01136) | 1167683..1168090 | + | 408 | WP_015984897.1 | RusA family crossover junction endodeoxyribonuclease | - |
| CDIF104450_RS05705 (CDIF104450_01137) | 1168192..1169040 | + | 849 | WP_009894735.1 | ORF6C domain-containing protein | - |
| CDIF104450_RS05710 (CDIF104450_01138) | 1169143..1169631 | + | 489 | WP_009894737.1 | hypothetical protein | - |
| CDIF104450_RS05715 (CDIF104450_01139) | 1170378..1170551 | + | 174 | WP_009894739.1 | hypothetical protein | - |
| CDIF104450_RS05720 (CDIF104450_01140) | 1170551..1171162 | + | 612 | WP_009894741.1 | hypothetical protein | - |
| CDIF104450_RS05725 (CDIF104450_01141) | 1171239..1171427 | + | 189 | WP_009894742.1 | hypothetical protein | - |
| CDIF104450_RS05730 (CDIF104450_01142) | 1171407..1171724 | - | 318 | WP_009894743.1 | hypothetical protein | - |
| CDIF104450_RS05735 (CDIF104450_01143) | 1171848..1172075 | + | 228 | WP_009894744.1 | hypothetical protein | - |
| CDIF104450_RS05740 (CDIF104450_01144) | 1172145..1172837 | + | 693 | WP_009894745.1 | phage terminase small subunit | - |
| CDIF104450_RS05745 (CDIF104450_01145) | 1172815..1174068 | + | 1254 | WP_015984838.1 | PBSX family phage terminase large subunit | - |
| CDIF104450_RS05750 (CDIF104450_01146) | 1174074..1175513 | + | 1440 | WP_015984839.1 | phage portal protein | - |
| CDIF104450_RS05755 (CDIF104450_01147) | 1175503..1176900 | + | 1398 | WP_015984840.1 | polymorphic toxin type 50 domain-containing protein | - |
| CDIF104450_RS05760 (CDIF104450_01148) | 1176915..1177115 | + | 201 | WP_009896618.1 | hypothetical protein | - |
| CDIF104450_RS05765 (CDIF104450_01149) | 1177181..1177744 | + | 564 | WP_015984841.1 | phage scaffolding protein | - |
| CDIF104450_RS05770 (CDIF104450_01150) | 1177756..1178655 | + | 900 | WP_003429841.1 | phage capsid protein | - |
| CDIF104450_RS05775 (CDIF104450_01151) | 1178655..1178888 | + | 234 | WP_003429842.1 | hypothetical protein | - |
| CDIF104450_RS05780 (CDIF104450_01152) | 1178898..1179299 | + | 402 | WP_015984842.1 | hypothetical protein | - |
| CDIF104450_RS05785 (CDIF104450_01153) | 1179293..1179640 | + | 348 | WP_015984843.1 | hypothetical protein | - |
| CDIF104450_RS05790 (CDIF104450_01154) | 1179640..1180065 | + | 426 | WP_009896626.1 | HK97 gp10 family phage protein | - |
| CDIF104450_RS05795 (CDIF104450_01155) | 1180058..1180495 | + | 438 | WP_009901457.1 | hypothetical protein | - |
| CDIF104450_RS05800 (CDIF104450_01156) | 1180488..1180664 | + | 177 | WP_021368348.1 | hypothetical protein | - |
| CDIF104450_RS05805 (CDIF104450_01157) | 1180665..1181975 | + | 1311 | WP_015984844.1 | phage tail sheath family protein | - |
| CDIF104450_RS05810 (CDIF104450_01158) | 1181997..1182467 | + | 471 | WP_015984845.1 | phage tail tube protein | - |
| CDIF104450_RS05815 (CDIF104450_01159) | 1182520..1182777 | + | 258 | WP_015984846.1 | hypothetical protein | - |
| CDIF104450_RS05820 (CDIF104450_01160) | 1182782..1183222 | + | 441 | WP_015984847.1 | hypothetical protein | - |
| CDIF104450_RS05825 | 1183543..1183704 | + | 162 | WP_009901465.1 | hypothetical protein | Toxin Detail |
| CDIF104450_RS05830 (CDIF104450_01161) | 1183853..1184086 | + | 234 | WP_015984848.1 | hypothetical protein | - |
| CDIF104450_RS05835 (CDIF104450_01162) | 1184146..1184673 | + | 528 | WP_015984849.1 | DUF4352 domain-containing protein | - |
| CDIF104450_RS05840 (CDIF104450_01163) | 1184815..1185375 | + | 561 | WP_015984850.1 | hypothetical protein | - |
| CDIF104450_RS05845 (CDIF104450_01164) | 1185453..1187741 | + | 2289 | WP_015984851.1 | tape measure protein | - |
| CDIF104450_RS05850 (CDIF104450_01165) | 1187758..1188459 | + | 702 | WP_015984852.1 | LysM peptidoglycan-binding domain-containing protein | - |
| CDIF104450_RS05855 (CDIF104450_01166) | 1188452..1190422 | + | 1971 | WP_021368250.1 | NlpC/P60 family protein | - |
| CDIF104450_RS05860 (CDIF104450_01167) | 1190436..1190696 | + | 261 | WP_009901352.1 | DUF2577 domain-containing protein | - |
| CDIF104450_RS05865 (CDIF104450_01168) | 1190701..1191120 | + | 420 | WP_009896659.1 | DUF2634 domain-containing protein | - |
| CDIF104450_RS05870 (CDIF104450_01169) | 1191121..1192170 | + | 1050 | WP_009896661.1 | baseplate J/gp47 family protein | - |
| CDIF104450_RS05875 (CDIF104450_01170) | 1192163..1192780 | + | 618 | WP_009896663.1 | YmfQ family protein | - |
| CDIF104450_RS05880 (CDIF104450_01171) | 1192792..1193814 | + | 1023 | WP_022582609.1 | phage tail protein | - |
| CDIF104450_RS05885 (CDIF104450_01172) | 1193828..1195510 | + | 1683 | WP_021366409.1 | glycine rich domain-containing protein | - |
| CDIF104450_RS05890 (CDIF104450_01173) | 1195524..1195817 | + | 294 | WP_021435055.1 | hypothetical protein | - |
| CDIF104450_RS05895 (CDIF104450_01174) | 1195817..1195999 | + | 183 | WP_016056339.1 | hypothetical protein | - |
| CDIF104450_RS05900 (CDIF104450_01175) | 1196032..1197267 | + | 1236 | WP_021427043.1 | hypothetical protein | - |
| CDIF104450_RS05905 (CDIF104450_01176) | 1197264..1197563 | + | 300 | WP_021381672.1 | hypothetical protein | - |
| CDIF104450_RS05910 | 1197565..1197702 | + | 138 | WP_021372184.1 | XkdX family protein | - |
| CDIF104450_RS05915 (CDIF104450_01177) | 1197764..1198195 | + | 432 | WP_021372187.1 | phage holin family protein | - |
| CDIF104450_RS05920 (CDIF104450_01178) | 1198195..1199007 | + | 813 | WP_015984863.1 | N-acetylmuramoyl-L-alanine amidase | - |
| CDIF104450_RS05925 (CDIF104450_01179) | 1199103..1199450 | + | 348 | WP_009898409.1 | hypothetical protein | - |
| CDIF104450_RS05930 (CDIF104450_01180) | 1199616..1200134 | + | 519 | WP_009898407.1 | DUF5706 domain-containing protein | - |
| CDIF104450_RS05935 (CDIF104450_01181) | 1200198..1201784 | - | 1587 | WP_015984865.1 | hypothetical protein | - |
| CDIF104450_RS05940 (CDIF104450_01182) | 1201760..1202281 | - | 522 | WP_009898403.1 | ImmA/IrrE family metallo-endopeptidase | - |
| CDIF104450_RS05945 (CDIF104450_01183) | 1202983..1203171 | - | 189 | WP_009898401.1 | hypothetical protein | - |
| CDIF104450_RS05950 | 1203431..1203574 | + | 144 | WP_011861731.1 | hypothetical protein | Toxin Detail |
| - | 1203496..1203646 | - | 151 | - | - | Antitoxin Detail |
| CDIF104450_RS05955 (CDIF104450_01184) | 1204081..1204458 | + | 378 | WP_021391346.1 | BlaI/MecI/CopY family transcriptional regulator | - |
| CDIF104450_RS05960 (CDIF104450_01185) | 1204568..1204951 | + | 384 | WP_015984867.1 | BlaI/MecI/CopY family transcriptional regulator | - |
| CDIF104450_RS05965 (CDIF104450_01186) | 1205145..1205720 | + | 576 | WP_021360401.1 | GntR family transcriptional regulator | - |
| CDIF104450_RS05970 (CDIF104450_01187) | 1205746..1206159 | + | 414 | WP_009896035.1 | PTS sugar transporter subunit IIA | - |
| CDIF104450_RS05975 (CDIF104450_01188) | 1206163..1206906 | + | 744 | WP_003437997.1 | BtpA/SgcQ family protein | - |
| CDIF104450_RS05980 (CDIF104450_01189) | 1206906..1207376 | + | 471 | WP_003428544.1 | PTS sugar transporter subunit IIB | - |
| CDIF104450_RS05985 (CDIF104450_01190) | 1207393..1208151 | + | 759 | WP_009888882.1 | PTS sugar transporter subunit IIC | - |
| CDIF104450_RS05990 (CDIF104450_01191) | 1208135..1208977 | + | 843 | WP_003418955.1 | PTS system mannose/fructose/sorbose family transporter subunit IID | - |
| CDIF104450_RS05995 (CDIF104450_01192) | 1209137..1210042 | - | 906 | WP_021366520.1 | selenium metabolism-associated LysR family transcriptional regulator | - |
| CDIF104450_RS06000 (CDIF104450_01193) | 1210404..1211138 | + | 735 | WP_003438006.1 | hypothetical protein | - |
| CDIF104450_RS06005 (CDIF104450_01194) | 1211349..1212530 | + | 1182 | WP_021366441.1 | molybdopterin molybdotransferase MoeA | - |
| CDIF104450_RS06010 (CDIF104450_01195) | 1212535..1213086 | + | 552 | WP_009892891.1 | molybdopterin-guanine dinucleotide biosynthesis protein B | - |
| CDIF104450_RS06015 (CDIF104450_01196) | 1213205..1213480 | + | 276 | WP_003428537.1 | PTS sugar transporter subunit IIB | - |
| CDIF104450_RS06020 (CDIF104450_01197) | 1213723..1215423 | + | 1701 | WP_003438014.1 | ABC transporter ATP-binding protein | - |
| CDIF104450_RS06025 (CDIF104450_01198) | 1215786..1216973 | + | 1188 | WP_003438015.1 | membrane protein | - |
| CDIF104450_RS06030 (CDIF104450_01199) | 1217033..1218196 | + | 1164 | WP_011861090.1 | M20 family metallopeptidase | - |
| CDIF104450_RS06035 (CDIF104450_01200) | 1218347..1219150 | + | 804 | WP_009892895.1 | zinc transporter ZupT | - |
| CDIF104450_RS06040 (CDIF104450_01201) | 1219255..1219806 | + | 552 | WP_009888890.1 | DUF2812 domain-containing protein | - |
| CDIF104450_RS06045 (CDIF104450_01202) | 1220057..1220770 | + | 714 | WP_003438019.1 | two-component system response regulator RgbR | - |
Similar MGE(s)
Similar MGE(s) is defined as other TA-related MGE(s) with Mash distance < 0.01 to this MGE.
| Detail | Organism | MGE type | Related TA | Genome accession | Coordinates | Mash distance |
|---|