MGE detailed information
MGE type: Prophage MGE length: 66438 bp
Accession: NZ_CP026596 Location: 1684538..1750975 Organism: Clostridioides difficile strain 10-00071 Replicon: chromosome
Accession: NZ_CP026596 Location: 1684538..1750975 Organism: Clostridioides difficile strain 10-00071 Replicon: chromosome
Gene structure
The 5 kb flanking regions of this MGE are displayed.
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| C3349_RS08095 () | 1679643..1680404 | + | 762 | WP_009889424.1 | M48 family metallopeptidase | - |
| C3349_RS08100 () | 1680935..1681174 | + | 240 | WP_003429800.1 | ACT domain-containing protein | - |
| C3349_RS08105 () | 1681444..1682439 | + | 996 | WP_012816147.1 | ketol-acid reductoisomerase | - |
| C3349_RS08110 () | 1682492..1684180 | + | 1689 | WP_009888799.1 | biosynthetic-type acetolactate synthase large subunit | - |
| C3349_RS08115 () | 1684538..1685668 | - | 1131 | WP_003429803.1 | Putative prophage phiRv2 integrase ; Integrase | Integrase |
| C3349_RS08120 () | 1685747..1686454 | - | 708 | WP_009888800.1 | HIRAN domain-containing protein | - |
| C3349_RS08125 () | 1686467..1687336 | - | 870 | WP_009888801.1 | HipA domain-containing protein | - |
| C3349_RS08130 () | 1687956..1688462 | - | 507 | WP_003429804.1 | ImmA/IrrE family metallo-endopeptidase | - |
| C3349_RS08135 () | 1688538..1689086 | - | 549 | WP_009893126.1 | helix-turn-helix domain-containing protein | - |
| C3349_RS08140 () | 1689098..1689439 | - | 342 | WP_009888806.1 | XRE family transcriptional regulator | - |
| C3349_RS08145 () | 1689616..1689819 | + | 204 | WP_009893129.1 | helix-turn-helix domain-containing protein | - |
| C3349_RS08150 () | 1689867..1690676 | + | 810 | WP_009888810.1 | phage antirepressor | - |
| C3349_RS08155 () | 1690723..1690932 | + | 210 | WP_009888812.1 | hypothetical protein | - |
| C3349_RS08160 () | 1690942..1691316 | - | 375 | WP_003433505.1 | hypothetical protein | - |
| C3349_RS08165 () | 1691392..1691589 | + | 198 | WP_009888813.1 | helix-turn-helix transcriptional regulator | - |
| C3349_RS08170 () | 1691620..1692012 | + | 393 | WP_009888815.1 | helix-turn-helix domain-containing protein | - |
| C3349_RS19230 () | 1691993..1692142 | + | 150 | WP_003429817.1 | hypothetical protein | - |
| C3349_RS08175 () | 1692213..1692650 | + | 438 | WP_003433513.1 | hypothetical protein | - |
| C3349_RS08180 () | 1692662..1693828 | + | 1167 | WP_009888818.1 | DUF2800 domain-containing protein | - |
| C3349_RS08185 () | 1693843..1694178 | + | 336 | WP_009888819.1 | hypothetical protein | - |
| C3349_RS08190 () | 1694231..1694803 | + | 573 | WP_003429822.1 | DNA-directed RNA polymerase sigma-70 factor | - |
| C3349_RS08195 () | 1694826..1695398 | + | 573 | WP_003433516.1 | DUF2815 family protein | - |
| C3349_RS08200 () | 1695398..1697356 | + | 1959 | WP_009888821.1 | DNA polymerase | - |
| C3349_RS08205 () | 1697368..1699785 | + | 2418 | WP_009888822.1 | virulence-associated E family protein | - |
| C3349_RS08210 () | 1700067..1700393 | + | 327 | WP_003433522.1 | VRR-NUC domain-containing protein | - |
| C3349_RS08215 () | 1700342..1701712 | + | 1371 | WP_009888823.1 | DEAD/DEAH box helicase | - |
| C3349_RS19340 () | 1701736..1701873 | + | 138 | WP_009888824.1 | hypothetical protein | - |
| C3349_RS08220 () | 1701866..1702345 | + | 480 | WP_009888825.1 | sigma-70 region 4 domain-containing protein | - |
| C3349_RS08225 () | 1702628..1703177 | + | 550 | Protein_1488 | Bro-N domain-containing protein | - |
| C3349_RS08230 () | 1703372..1704346 | + | 975 | WP_009888827.1 | hypothetical protein | - |
| C3349_RS19235 () | 1704367..1704876 | + | 510 | WP_003429834.1 | hypothetical protein | - |
| C3349_RS08245 () | 1704946..1705638 | + | 693 | WP_009888829.1 | helix-turn-helix domain-containing protein | - |
| C3349_RS08250 () | 1705616..1706869 | + | 1254 | WP_012816148.1 | PBSX family phage terminase large subunit | - |
| C3349_RS08255 () | 1706875..1708317 | + | 1443 | WP_009888831.1 | phage portal protein | - |
| C3349_RS08260 () | 1708307..1709842 | + | 1536 | WP_009893134.1 | minor capsid protein | - |
| C3349_RS08265 () | 1709844..1710092 | + | 249 | WP_009888832.1 | hypothetical protein | - |
| C3349_RS08270 () | 1710160..1710723 | + | 564 | WP_009888833.1 | phage scaffolding protein | - |
| C3349_RS08275 () | 1710735..1711625 | + | 891 | WP_009888834.1 | hypothetical protein | - |
| C3349_RS08280 () | 1711644..1711877 | + | 234 | WP_009888835.1 | hypothetical protein | - |
| C3349_RS08285 () | 1711887..1712288 | + | 402 | WP_009888836.1 | hypothetical protein | - |
| C3349_RS08290 () | 1712282..1712629 | + | 348 | WP_003433540.1 | hypothetical protein | - |
| C3349_RS08295 () | 1712629..1712919 | + | 291 | WP_009893135.1 | HK97 gp10 family phage protein | - |
| C3349_RS08300 () | 1713029..1713835 | + | 807 | WP_009888838.1 | hypothetical protein | - |
| C3349_RS08305 () | 1714184..1714621 | + | 438 | WP_009888839.1 | hypothetical protein | - |
| C3349_RS08310 () | 1714614..1714790 | + | 177 | WP_009888840.1 | hypothetical protein | - |
| C3349_RS08315 () | 1714791..1716101 | + | 1311 | WP_009893136.1 | phage tail sheath family protein | - |
| C3349_RS08320 () | 1716118..1716588 | + | 471 | WP_009888842.1 | phage tail tube protein | - |
| C3349_RS08325 () | 1716647..1717474 | + | 828 | WP_009888843.1 | hypothetical protein | - |
| C3349_RS08330 () | 1717546..1717986 | + | 441 | WP_003429853.1 | phage portal protein | - |
| C3349_RS08340 () | 1718327..1718488 | + | 162 | WP_003429855.1 | hypothetical protein | Toxin Detail |
| - () | 1718408..1718547 | - | 140 | NuclAT_1 | - | Antitoxin Detail |
| - () | 1718408..1718547 | - | 140 | NuclAT_2 | - | Antitoxin Detail |
| - () | 1718892..1718940 | - | 49 | NuclAT_4 | - | - |
| - () | 1718892..1718940 | - | 49 | NuclAT_5 | - | - |
| C3349_RS08345 () | 1719825..1720013 | + | 189 | WP_003429858.1 | hypothetical protein | - |
| C3349_RS08350 () | 1720132..1720998 | + | 867 | WP_009888845.1 | hypothetical protein | - |
| C3349_RS08360 () | 1721863..1722390 | + | 528 | WP_009888847.1 | DUF4352 domain-containing protein | - |
| C3349_RS08365 () | 1722528..1723295 | + | 768 | WP_009888848.1 | DUF4428 domain-containing protein | - |
| C3349_RS08370 () | 1723361..1725733 | + | 2373 | WP_009893138.1 | tape measure protein | - |
| C3349_RS08375 () | 1725750..1726439 | + | 690 | WP_009888849.1 | LysM peptidoglycan-binding domain-containing protein | - |
| C3349_RS08380 () | 1726432..1728324 | + | 1893 | WP_009893140.1 | Gamma-D-glutamyl-L-lysine dipeptidyl-peptidase | VF |
| C3349_RS08385 () | 1728338..1728598 | + | 261 | WP_009893142.1 | DUF2577 domain-containing protein | - |
| C3349_RS08390 () | 1728603..1729022 | + | 420 | WP_009888851.1 | DUF2634 domain-containing protein | - |
| C3349_RS08395 () | 1729023..1730072 | + | 1050 | WP_009888852.1 | baseplate J/gp47 family protein | - |
| C3349_RS08400 () | 1730065..1730682 | + | 618 | WP_003433579.1 | YmfQ family protein | - |
| C3349_RS08405 () | 1730694..1731719 | + | 1026 | WP_009888853.1 | phage tail protein | - |
| C3349_RS08410 () | 1731736..1733262 | + | 1527 | WP_009893144.1 | hypothetical protein | - |
| C3349_RS08415 () | 1733277..1733570 | + | 294 | WP_009889429.1 | hypothetical protein | - |
| C3349_RS08420 () | 1733570..1733752 | + | 183 | WP_009889431.1 | hypothetical protein | - |
| C3349_RS08425 () | 1733786..1734352 | + | 567 | WP_009889434.1 | hypothetical protein | - |
| C3349_RS08430 () | 1734383..1734673 | + | 291 | WP_009889435.1 | hypothetical protein | - |
| C3349_RS08435 () | 1734677..1734934 | + | 258 | WP_009889440.1 | phage holin family protein | - |
| C3349_RS08440 () | 1735195..1736058 | + | 864 | WP_003429958.1 | Abi family protein | - |
| C3349_RS08445 () | 1736137..1736949 | + | 813 | WP_009889444.1 | N-acetylmuramoyl-L-alanine amidase | - |
| C3349_RS08450 () | 1737043..1739442 | + | 2400 | WP_009893147.1 | N-acetylmuramoyl-L-alanine amidase LytC | VF |
| C3349_RS08455 () | 1739483..1739668 | - | 186 | WP_003433687.1 | hypothetical protein | - |
| C3349_RS08460 () | 1740363..1741040 | + | 678 | WP_009889448.1 | manganese catalase family protein | - |
| C3349_RS08465 () | 1741214..1743250 | + | 2037 | WP_009889450.1 | thioredoxin domain-containing protein | - |
| C3349_RS08470 () | 1743441..1744007 | - | 567 | WP_009889452.1 | MarR family transcriptional regulator | - |
| C3349_RS08475 () | 1744291..1744818 | + | 528 | Protein_1535 | alpha/beta fold hydrolase | - |
| C3349_RS08485 () | 1745450..1745557 | + | 108 | WP_009889455.1 | transposase | - |
| C3349_RS08490 () | 1745559..1746676 | + | 1118 | Protein_1537 | IS200-IS605 family transposase ISBth17 | Transposase |
| C3349_RS08495 () | 1746741..1747202 | + | 462 | WP_009889460.1 | alpha/beta hydrolase | - |
| C3349_RS08500 () | 1747667..1748881 | + | 1215 | WP_009893153.1 | ISNCY family transposase ISH7A | Transposase |
| C3349_RS08505 () | 1749301..1749822 | - | 522 | WP_009889468.1 | GNAT family N-acetyltransferase | - |
| C3349_RS08510 () | 1750178..1750975 | + | 798 | WP_003436560.1 | 3D domain-containing protein | - |
| C3349_RS08515 () | 1751085..1751675 | + | 591 | WP_009893156.1 | SGNH/GDSL hydrolase family protein | - |
| C3349_RS08520 () | 1751741..1753438 | + | 1698 | WP_009893157.1 | phospho-sugar mutase | - |
| C3349_RS08525 () | 1753652..1754491 | + | 840 | WP_003436555.1 | YihY/virulence factor BrkB family protein | - |
Similar MGE(s)
Similar MGE(s) is defined as other TA-related MGE(s) with Mash distance < 0.01 to this MGE.
| Detail | Organism | MGE type | Related TA | Genome accession | Coordinates | Mash distance |
|---|---|---|---|---|---|---|
| Clostridium difficile R20291 | Prophage | TA24266 | NC_013316 | 1671047..1738184 | 0 |