Detailed information of TA system TA074467

Bioinformatically predicted

Overview

TA module

• Type: I
• Classification (family/domain): CD-RCd/-
• Location: 2885839..2886056
• Replicon: chromosome
• Accession: NZ_CP020378
• Organism: Clostridioides difficile strain DSM 102859

Toxin (Protein)

• Gene name: CD2517.1
• Uniprot ID: -
• Locus tag: CDIF102859_RS14010
• Protein ID: WP_021375974.1
• Coordinates: 2885898..2886056 (-)
• Length: 53 a.a.

Antitoxin (RNA)

Gene name	CD630_n00500
Locus tag	-
Coordinates	2885839..2885882 (+)

Genomic Context

Locus tag	Coordinates	Strand	Size (bp)	Protein ID	Product	Description
CDIF102859_RS13995	2882276..2883904	+	1629	WP_021376019.1	aspartate 4-decarboxylase	-
CDIF102859_RS14000	2884025..2885020	+	996	WP_021376103.1	asparaginase	-
CDIF102859_RS14005	2885182..2885352	-	171	WP_077708801.1	IS3 family transposase	-
-	2885839..2885882	+	44	NuclAT_2	-	Antitoxin
CDIF102859_RS14010	2885898..2886056	-	159	WP_021375974.1	hypothetical protein	Toxin
CDIF102859_RS14015	2886478..2888898	-	2421	WP_021376018.1	leucine--tRNA ligase	-
CDIF102859_RS14020	2889252..2889602	-	351	WP_003416416.1	ribosome silencing factor	-
CDIF102859_RS14025	2889719..2890291	-	573	WP_003431048.1	bis(5'-nucleosyl)-tetraphosphatase (symmetrical) YqeK	-
CDIF102859_RS14030	2890292..2890981	-	690	WP_003416411.1	nicotinate-nucleotide adenylyltransferase	-

Associated MGEs

MGE detail	Similar MGEs	Relative position	MGE Type	Cargo ARG	Virulence gene	Coordinates	Length (bp)

Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.

Domains

Predicted by InterproScan

Toxin

No domain identified.

Sequences

Toxin

Protein

• Length: 53 a.a.
• Molecular weight: 6026.23 Da
• Isoelectric Point: 11.3102

>T74467 WP_021375974.1 NZ_CP020378:c2886056-2885898 [Clostridioides difficile]
MDNFLQGILASLSASLIVYITSKLFGKRKKPLKAATKSGWEFDFKIKFRRFK

Nucleotide

• Length: 159 bp

>T74467 NZ_CP020378:c2886056-2885898 [Clostridioides difficile]
ATGGATAATTTTTTACAAGGTATACTAGCGAGTCTATCTGCTAGTTTAATAGTCTATATAACTAGCAAGTTATTTGGAAA
ACGTAAAAAACCACTCAAAGCTGCAACTAAGAGTGGTTGGGAGTTTGATTTTAAAATCAAATTCCGTAGATTTAAATAA

Antitoxin

Nucleotide

• Length: 44 bp

>AT74467 NZ_CP020378:2885839-2885882 [Clostridioides difficile]
AAGAAGAACTACAATCTATTTAGACGTAGAGTGGAGTTCATAAT

Structures

Antitoxin