MGE detailed information
MGE type: Prophage MGE length: 66622 bp
Accession: NZ_CP016102 Location: 1736544..1803165 Organism: Clostridioides difficile strain DSM 29627 Replicon: chromosome
Accession: NZ_CP016102 Location: 1736544..1803165 Organism: Clostridioides difficile strain DSM 29627 Replicon: chromosome
Gene structure
The 5 kb flanking regions of this MGE are displayed.
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| CDIF29627_RS08300 () | 1731616..1732377 | + | 762 | WP_003429799.1 | M48 family metallopeptidase | - |
| CDIF29627_RS08305 () | 1732907..1733146 | + | 240 | WP_003429800.1 | ACT domain-containing protein | - |
| CDIF29627_RS08310 () | 1733450..1734445 | + | 996 | WP_003429801.1 | ketol-acid reductoisomerase | - |
| CDIF29627_RS08315 () | 1734498..1736186 | + | 1689 | WP_003429802.1 | biosynthetic-type acetolactate synthase large subunit | - |
| CDIF29627_RS08320 () | 1736544..1737674 | - | 1131 | WP_003433492.1 | Putative prophage phiRv2 integrase ; Integrase | Integrase |
| CDIF29627_RS08325 () | 1737914..1738420 | - | 507 | WP_003429804.1 | ImmA/IrrE family metallo-endopeptidase | - |
| CDIF29627_RS08330 () | 1738683..1740272 | - | 1590 | WP_003429805.1 | SIR2 family protein | - |
| CDIF29627_RS08335 () | 1740296..1740841 | - | 546 | WP_003433494.1 | helix-turn-helix domain-containing protein | - |
| CDIF29627_RS08340 () | 1741022..1741237 | + | 216 | WP_003433496.1 | helix-turn-helix domain-containing protein | - |
| CDIF29627_RS08345 () | 1741268..1742041 | + | 774 | WP_003433498.1 | Rha family transcriptional regulator | - |
| CDIF29627_RS08350 () | 1742161..1742991 | + | 831 | WP_021387707.1 | phage antirepressor KilAC domain-containing protein | - |
| CDIF29627_RS08355 () | 1743038..1743247 | + | 210 | WP_009888812.1 | hypothetical protein | - |
| CDIF29627_RS08360 () | 1743257..1743631 | - | 375 | WP_003433505.1 | hypothetical protein | - |
| CDIF29627_RS08365 () | 1743707..1743904 | + | 198 | WP_003433507.1 | helix-turn-helix transcriptional regulator | - |
| CDIF29627_RS08370 () | 1743935..1744327 | + | 393 | WP_003433509.1 | helix-turn-helix domain-containing protein | - |
| CDIF29627_RS19675 () | 1744314..1744457 | + | 144 | WP_021387706.1 | hypothetical protein | - |
| CDIF29627_RS08375 () | 1744528..1744965 | + | 438 | WP_003433513.1 | hypothetical protein | - |
| CDIF29627_RS08380 () | 1744977..1746143 | + | 1167 | WP_003433514.1 | DUF2800 domain-containing protein | - |
| CDIF29627_RS08385 () | 1746158..1746493 | + | 336 | WP_003433515.1 | hypothetical protein | - |
| CDIF29627_RS08390 () | 1746546..1747118 | + | 573 | WP_003429822.1 | DNA-directed RNA polymerase sigma-70 factor | - |
| CDIF29627_RS08395 () | 1747141..1747713 | + | 573 | WP_003433516.1 | DUF2815 family protein | - |
| CDIF29627_RS08400 () | 1747713..1749671 | + | 1959 | WP_003433517.1 | DNA polymerase | - |
| CDIF29627_RS08405 () | 1749683..1752100 | + | 2418 | WP_003433519.1 | virulence-associated E family protein | - |
| CDIF29627_RS08410 () | 1752382..1752708 | + | 327 | WP_003433522.1 | VRR-NUC domain-containing protein | - |
| CDIF29627_RS08415 () | 1752657..1754027 | + | 1371 | WP_003433524.1 | DEAD/DEAH box helicase | - |
| CDIF29627_RS19680 () | 1754051..1754188 | + | 138 | WP_003429830.1 | hypothetical protein | - |
| CDIF29627_RS08420 () | 1754181..1754660 | + | 480 | WP_003433526.1 | sigma-70 region 4 domain-containing protein | - |
| CDIF29627_RS08425 () | 1755145..1755381 | + | 237 | WP_003429832.1 | hypothetical protein | - |
| CDIF29627_RS08430 () | 1755684..1756658 | + | 975 | WP_003429833.1 | hypothetical protein | - |
| CDIF29627_RS19600 () | 1756679..1757188 | + | 510 | WP_003429834.1 | hypothetical protein | - |
| CDIF29627_RS08445 () | 1757259..1757951 | + | 693 | WP_003433528.1 | hypothetical protein | - |
| CDIF29627_RS08450 () | 1757929..1759182 | + | 1254 | WP_003433530.1 | PBSX family phage terminase large subunit | - |
| CDIF29627_RS08455 () | 1759188..1760627 | + | 1440 | WP_003429837.1 | phage portal protein | - |
| CDIF29627_RS08460 () | 1760617..1762110 | + | 1494 | WP_003429838.1 | minor capsid protein | - |
| CDIF29627_RS08465 () | 1762076..1762318 | + | 243 | WP_009901430.1 | hypothetical protein | - |
| CDIF29627_RS08470 () | 1762628..1763191 | + | 564 | WP_003433534.1 | phage scaffolding protein | - |
| CDIF29627_RS08475 () | 1763203..1764102 | + | 900 | WP_003429841.1 | phage capsid protein | - |
| CDIF29627_RS08480 () | 1764102..1764335 | + | 234 | WP_003433536.1 | hypothetical protein | - |
| CDIF29627_RS08485 () | 1764345..1764746 | + | 402 | WP_009888836.1 | hypothetical protein | - |
| CDIF29627_RS08490 () | 1764740..1765087 | + | 348 | WP_003433540.1 | hypothetical protein | - |
| CDIF29627_RS08495 () | 1765087..1765512 | + | 426 | WP_003433542.1 | HK97 gp10 family phage protein | - |
| CDIF29627_RS08500 () | 1765505..1765942 | + | 438 | WP_003433544.1 | hypothetical protein | - |
| CDIF29627_RS08505 () | 1765935..1766111 | + | 177 | WP_003433548.1 | hypothetical protein | - |
| CDIF29627_RS08510 () | 1766112..1767422 | + | 1311 | WP_003433550.1 | phage tail sheath family protein | - |
| CDIF29627_RS08515 () | 1767439..1767909 | + | 471 | WP_003429851.1 | phage tail tube protein | - |
| CDIF29627_RS08520 () | 1767981..1768421 | + | 441 | WP_003429853.1 | phage portal protein | - |
| CDIF29627_RS08530 () | 1768762..1768923 | + | 162 | WP_003429855.1 | hypothetical protein | Toxin Detail |
| - () | 1768843..1768976 | - | 134 | NuclAT_0 | - | Antitoxin Detail |
| - () | 1768843..1768976 | - | 134 | NuclAT_1 | - | Antitoxin Detail |
| - () | 1769321..1769369 | - | 49 | NuclAT_5 | - | - |
| - () | 1769321..1769369 | - | 49 | NuclAT_6 | - | - |
| CDIF29627_RS08535 () | 1770248..1770823 | + | 576 | WP_043897361.1 | SHOCT domain-containing protein | - |
| CDIF29627_RS08540 () | 1771127..1771300 | + | 174 | WP_003433557.1 | hypothetical protein | - |
| CDIF29627_RS19685 () | 1771424..1772251 | + | 828 | WP_003433559.1 | hypothetical protein | - |
| CDIF29627_RS19690 () | 1772300..1772476 | + | 177 | WP_003433561.1 | hypothetical protein | - |
| CDIF29627_RS08550 () | 1772907..1773467 | + | 561 | WP_021387709.1 | ribosomal protein L7/L12 | - |
| CDIF29627_RS08555 () | 1773543..1775909 | + | 2367 | WP_003433567.1 | tape measure protein | - |
| CDIF29627_RS08560 () | 1775925..1776626 | + | 702 | WP_003433569.1 | LysM peptidoglycan-binding domain-containing protein | - |
| CDIF29627_RS08565 () | 1776619..1778583 | + | 1965 | WP_003433571.1 | Murein DD-endopeptidase MepH | VF |
| CDIF29627_RS08570 () | 1778597..1778857 | + | 261 | WP_003433573.1 | DUF2577 domain-containing protein | - |
| CDIF29627_RS08575 () | 1778862..1779281 | + | 420 | WP_003433575.1 | DUF2634 domain-containing protein | - |
| CDIF29627_RS08580 () | 1779282..1780328 | + | 1047 | WP_032512186.1 | baseplate J/gp47 family protein | - |
| CDIF29627_RS08585 () | 1780321..1780938 | + | 618 | WP_003433579.1 | YmfQ family protein | - |
| CDIF29627_RS08590 () | 1780950..1781942 | + | 993 | WP_021363498.1 | phage tail protein | - |
| CDIF29627_RS08595 () | 1781959..1783269 | + | 1311 | Protein_1568 | hypothetical protein | - |
| CDIF29627_RS08600 () | 1783692..1784039 | + | 348 | WP_003429875.1 | hypothetical protein | - |
| CDIF29627_RS19695 () | 1784051..1784221 | + | 171 | WP_003429877.1 | hypothetical protein | - |
| CDIF29627_RS08605 () | 1784252..1784818 | + | 567 | WP_021363499.1 | hypothetical protein | - |
| CDIF29627_RS08610 () | 1784849..1785139 | + | 291 | WP_021363500.1 | hypothetical protein | - |
| CDIF29627_RS08615 () | 1785143..1785400 | + | 258 | WP_021363501.1 | phage holin family protein | - |
| CDIF29627_RS08620 () | 1785661..1786523 | + | 863 | Protein_1574 | Abi family protein | - |
| CDIF29627_RS08625 () | 1786602..1787414 | + | 813 | WP_021387710.1 | N-acetylmuramoyl-L-alanine amidase | - |
| CDIF29627_RS08630 () | 1787571..1789862 | + | 2292 | WP_021388366.1 | Internalin-J | VF |
| CDIF29627_RS08635 () | 1789904..1790089 | - | 186 | WP_003433687.1 | hypothetical protein | - |
| CDIF29627_RS19605 () | 1790607..1790783 | - | 177 | WP_016728851.1 | hypothetical protein | - |
| CDIF29627_RS19700 () | 1790785..1790952 | - | 168 | WP_003433670.1 | hypothetical protein | - |
| CDIF29627_RS08640 () | 1791500..1792177 | + | 678 | WP_003429969.1 | manganese catalase family protein | - |
| CDIF29627_RS08645 () | 1792351..1794387 | + | 2037 | WP_003429971.1 | thioredoxin domain-containing protein | - |
| CDIF29627_RS08650 () | 1794580..1795146 | - | 567 | WP_003429973.1 | MarR family transcriptional regulator | - |
| CDIF29627_RS08655 () | 1795433..1796371 | + | 939 | WP_003429975.1 | alpha/beta hydrolase | - |
| CDIF29627_RS08660 () | 1796752..1797486 | + | 735 | WP_021387870.1 | Bacitracin export ATP-binding protein BceA | VF |
| CDIF29627_RS08665 () | 1797509..1799638 | + | 2130 | WP_003433668.1 | ABC transporter permease | - |
| CDIF29627_RS08670 () | 1799855..1801069 | + | 1215 | WP_003429978.1 | ISNCY family transposase ISH7A | Transposase |
| CDIF29627_RS08675 () | 1801491..1802012 | - | 522 | WP_021387871.1 | GNAT family N-acetyltransferase | - |
| CDIF29627_RS08680 () | 1802368..1803165 | + | 798 | WP_003429980.1 | 3D domain-containing protein | - |
| CDIF29627_RS08685 () | 1803275..1803865 | + | 591 | WP_003429982.1 | SGNH/GDSL hydrolase family protein | - |
| CDIF29627_RS08690 () | 1803931..1805628 | + | 1698 | WP_021393310.1 | phospho-sugar mutase | - |
| CDIF29627_RS08695 () | 1805842..1806681 | + | 840 | WP_003429990.1 | YihY/virulence factor BrkB family protein | - |
Similar MGE(s)
Similar MGE(s) is defined as other TA-related MGE(s) with Mash distance < 0.01 to this MGE.
| Detail | Organism | MGE type | Related TA | Genome accession | Coordinates | Mash distance |
|---|