MGE detailed information
MGE type: Prophage MGE length: 16788 bp
Accession: NZ_CP019860 Location: 2508819..2525606 Organism: Clostridioides difficile strain DSM 29632 Replicon: chromosome
Accession: NZ_CP019860 Location: 2508819..2525606 Organism: Clostridioides difficile strain DSM 29632 Replicon: chromosome
Gene structure
The 5 kb flanking regions of this MGE are displayed.
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| CDIF29632_RS11910 () | 2504036..2504737 | + | 702 | WP_004454563.1 | AzlC family ABC transporter permease | - |
| CDIF29632_RS11915 () | 2504730..2505053 | + | 324 | WP_004454564.1 | AzlD domain-containing protein | - |
| CDIF29632_RS11920 () | 2505259..2507319 | - | 2061 | WP_009897457.1 | sensor histidine kinase | - |
| CDIF29632_RS11930 () | 2507515..2508207 | - | 693 | WP_004454566.1 | response regulator transcription factor | - |
| CDIF29632_RS11935 () | 2508819..2509193 | - | 375 | WP_004454568.1 | BlaI/MecI/CopY family transcriptional regulator | - |
| CDIF29632_RS11940 () | 2509412..2509645 | + | 234 | WP_003423177.1 | hypothetical protein | VF |
| CDIF29632_RS11945 () | 2509629..2510042 | + | 414 | WP_004454570.1 | hypothetical protein | - |
| CDIF29632_RS11950 () | 2510061..2510261 | + | 201 | WP_004454572.1 | hypothetical protein | - |
| CDIF29632_RS11955 () | 2510639..2510956 | + | 318 | WP_004454574.1 | hypothetical protein | - |
| CDIF29632_RS11960 () | 2511092..2511556 | + | 465 | WP_021365574.1 | hypothetical protein | - |
| CDIF29632_RS11970 () | 2511880..2512041 | - | 162 | WP_004454578.1 | hypothetical protein | - |
| CDIF29632_RS11975 () | 2512093..2512545 | - | 453 | WP_021422473.1 | hypothetical protein | - |
| CDIF29632_RS11980 () | 2512542..2512907 | - | 366 | WP_016729316.1 | Bro-N domain-containing protein | - |
| CDIF29632_RS19560 () | 2513028..2513180 | - | 153 | WP_009897477.1 | hypothetical protein | - |
| CDIF29632_RS11985 () | 2514296..2515180 | - | 885 | WP_009897481.1 | hypothetical protein | - |
| - () | 2515324..2515453 | + | 130 | NuclAT_5 | - | Antitoxin Detail |
| CDIF29632_RS11990 () | 2515374..2515526 | - | 153 | WP_004454589.1 | hypothetical protein | Toxin Detail |
| CDIF29632_RS11995 () | 2515800..2516123 | - | 324 | WP_009897482.1 | hypothetical protein | - |
| CDIF29632_RS12000 () | 2516159..2516413 | - | 255 | WP_004454592.1 | hypothetical protein | - |
| CDIF29632_RS12010 () | 2516845..2517363 | - | 519 | Protein_2220 | IS200-IS605 family transposase ISEfa4 | Transposase |
| CDIF29632_RS12015 () | 2517653..2518027 | - | 375 | Protein_2221 | BlaI/MecI/CopY family transcriptional regulator | - |
| CDIF29632_RS12020 () | 2518132..2518506 | - | 375 | WP_004454597.1 | BlaI/MecI/CopY family transcriptional regulator | - |
| CDIF29632_RS12025 () | 2519310..2519798 | + | 489 | WP_004454599.1 | prepilin-type N-terminal cleavage/methylation domain-containing protein | - |
| CDIF29632_RS12030 () | 2520187..2520357 | + | 171 | WP_021394397.1 | hypothetical protein | - |
| CDIF29632_RS12040 () | 2520834..2521023 | - | 190 | Protein_2225 | IS3 family transposase ISEfa10 | Transposase |
| CDIF29632_RS12045 () | 2521185..2521535 | + | 351 | WP_004454606.1 | DUF3796 domain-containing protein | - |
| CDIF29632_RS12050 () | 2521537..2521737 | + | 201 | WP_004454608.1 | hypothetical protein | VF |
| CDIF29632_RS12055 () | 2522060..2522236 | + | 177 | WP_009890506.1 | hypothetical protein | - |
| CDIF29632_RS12060 () | 2522461..2522661 | + | 201 | WP_003423148.1 | cold-shock protein | - |
| CDIF29632_RS12065 () | 2523296..2524108 | + | 813 | WP_004454609.1 | molybdate ABC transporter substrate-binding protein | - |
| CDIF29632_RS12070 () | 2524118..2524909 | + | 792 | WP_009897495.1 | ABC transporter permease | - |
| CDIF29632_RS12075 () | 2524911..2525606 | + | 696 | WP_009893573.1 | Sulfate/thiosulfate import ATP-binding protein CysA | VF |
| CDIF29632_RS12080 () | 2525593..2526324 | + | 732 | WP_009897498.1 | membrane protein | - |
| CDIF29632_RS12085 () | 2526638..2527438 | + | 801 | WP_004454616.1 | PIG-L family deacetylase | - |
| CDIF29632_RS12090 () | 2527959..2528675 | + | 717 | WP_004454617.1 | response regulator transcription factor | - |
| CDIF29632_RS12095 () | 2528644..2530233 | + | 1590 | WP_032544300.1 | sensor histidine kinase | - |
Similar MGE(s)
Similar MGE(s) is defined as other TA-related MGE(s) with Mash distance < 0.01 to this MGE.
| Detail | Organism | MGE type | Related TA | Genome accession | Coordinates | Mash distance |
|---|