MGE detailed information
MGE type: Prophage MGE length: 65060 bp
Accession: NZ_CP019860 Location: 1672806..1737865 Organism: Clostridioides difficile strain DSM 29632 Replicon: chromosome
Accession: NZ_CP019860 Location: 1672806..1737865 Organism: Clostridioides difficile strain DSM 29632 Replicon: chromosome
Gene structure
The 5 kb flanking regions of this MGE are displayed.
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| CDIF29632_RS07945 () | 1667874..1668635 | + | 762 | WP_070538454.1 | M48 family metallopeptidase | - |
| CDIF29632_RS07950 () | 1669166..1669405 | + | 240 | WP_003429800.1 | ACT domain-containing protein | - |
| CDIF29632_RS07955 () | 1669709..1670704 | + | 996 | WP_074033748.1 | ketol-acid reductoisomerase | - |
| CDIF29632_RS07960 () | 1670757..1672445 | + | 1689 | WP_070538456.1 | biosynthetic-type acetolactate synthase large subunit | - |
| CDIF29632_RS07965 () | 1672806..1673936 | - | 1131 | WP_003433492.1 | Putative prophage phiRv2 integrase ; Integrase | Integrase |
| CDIF29632_RS07970 () | 1674176..1674682 | - | 507 | WP_003429804.1 | ImmA/IrrE family metallo-endopeptidase | - |
| CDIF29632_RS07975 () | 1674945..1676534 | - | 1590 | WP_003429805.1 | SIR2 family protein | - |
| CDIF29632_RS07980 () | 1676558..1677103 | - | 546 | WP_003433494.1 | helix-turn-helix domain-containing protein | - |
| CDIF29632_RS07985 () | 1677284..1677499 | + | 216 | WP_003433496.1 | helix-turn-helix domain-containing protein | - |
| CDIF29632_RS07990 () | 1677530..1678303 | + | 774 | WP_003433498.1 | Rha family transcriptional regulator | - |
| CDIF29632_RS07995 () | 1678423..1679253 | + | 831 | WP_021422305.1 | phage antirepressor KilAC domain-containing protein | - |
| CDIF29632_RS19530 () | 1679302..1679439 | + | 138 | WP_021424248.1 | hypothetical protein | - |
| CDIF29632_RS08000 () | 1679451..1679618 | - | 168 | WP_021418310.1 | Arc family DNA-binding protein | - |
| CDIF29632_RS08005 () | 1679765..1679917 | + | 153 | WP_077701546.1 | hypothetical protein | - |
| CDIF29632_RS08010 () | 1679910..1680713 | + | 804 | WP_022583092.1 | phage antirepressor KilAC domain-containing protein | - |
| CDIF29632_RS08015 () | 1680760..1680969 | + | 210 | WP_009888812.1 | hypothetical protein | - |
| CDIF29632_RS08020 () | 1680979..1681353 | - | 375 | WP_003433505.1 | hypothetical protein | - |
| CDIF29632_RS08025 () | 1681429..1681626 | + | 198 | WP_003433507.1 | helix-turn-helix transcriptional regulator | - |
| CDIF29632_RS08030 () | 1681657..1682049 | + | 393 | WP_003433509.1 | helix-turn-helix domain-containing protein | - |
| CDIF29632_RS19470 () | 1682030..1682179 | + | 150 | WP_003433511.1 | hypothetical protein | - |
| CDIF29632_RS08035 () | 1682250..1682687 | + | 438 | WP_003433513.1 | hypothetical protein | - |
| CDIF29632_RS08040 () | 1682699..1683865 | + | 1167 | WP_003433514.1 | DUF2800 domain-containing protein | - |
| CDIF29632_RS08045 () | 1683880..1684215 | + | 336 | WP_003433515.1 | hypothetical protein | - |
| CDIF29632_RS08050 () | 1684268..1684840 | + | 573 | WP_003429822.1 | DNA-directed RNA polymerase sigma-70 factor | - |
| CDIF29632_RS08055 () | 1684863..1685435 | + | 573 | WP_003433516.1 | DUF2815 family protein | - |
| CDIF29632_RS08060 () | 1685435..1687393 | + | 1959 | WP_003433517.1 | DNA polymerase | - |
| CDIF29632_RS08065 () | 1687405..1689822 | + | 2418 | WP_003433519.1 | virulence-associated E family protein | - |
| CDIF29632_RS08070 () | 1690104..1690430 | + | 327 | WP_003433522.1 | VRR-NUC domain-containing protein | - |
| CDIF29632_RS08075 () | 1690379..1691749 | + | 1371 | WP_003433524.1 | DEAD/DEAH box helicase | - |
| CDIF29632_RS19535 () | 1691773..1691910 | + | 138 | WP_003429830.1 | hypothetical protein | - |
| CDIF29632_RS08080 () | 1691903..1692382 | + | 480 | WP_003433526.1 | sigma-70 region 4 domain-containing protein | - |
| CDIF29632_RS08085 () | 1692867..1693103 | + | 237 | WP_003429832.1 | hypothetical protein | - |
| CDIF29632_RS08090 () | 1693406..1694380 | + | 975 | WP_003429833.1 | hypothetical protein | - |
| CDIF29632_RS19475 () | 1694401..1694910 | + | 510 | WP_003429834.1 | hypothetical protein | - |
| CDIF29632_RS08105 () | 1694981..1695673 | + | 693 | WP_003433528.1 | hypothetical protein | - |
| CDIF29632_RS08110 () | 1695651..1696904 | + | 1254 | WP_003433530.1 | PBSX family phage terminase large subunit | - |
| CDIF29632_RS08115 () | 1696910..1698349 | + | 1440 | WP_003429837.1 | phage portal protein | - |
| CDIF29632_RS08120 () | 1698339..1699832 | + | 1494 | WP_003429838.1 | minor capsid protein | - |
| CDIF29632_RS08125 () | 1699798..1700040 | + | 243 | WP_009901430.1 | hypothetical protein | - |
| CDIF29632_RS08130 () | 1700350..1700913 | + | 564 | WP_003433534.1 | phage scaffolding protein | - |
| CDIF29632_RS08135 () | 1700925..1701824 | + | 900 | WP_003429841.1 | phage capsid protein | - |
| CDIF29632_RS08140 () | 1701824..1702057 | + | 234 | WP_003433536.1 | hypothetical protein | - |
| CDIF29632_RS08145 () | 1702067..1702468 | + | 402 | WP_009888836.1 | hypothetical protein | - |
| CDIF29632_RS08150 () | 1702462..1702809 | + | 348 | WP_003433540.1 | hypothetical protein | - |
| CDIF29632_RS08155 () | 1702809..1703234 | + | 426 | WP_003433542.1 | HK97 gp10 family phage protein | - |
| CDIF29632_RS08160 () | 1703227..1703664 | + | 438 | WP_003433544.1 | hypothetical protein | - |
| CDIF29632_RS08165 () | 1703657..1703833 | + | 177 | WP_003433548.1 | hypothetical protein | - |
| CDIF29632_RS08170 () | 1703834..1705144 | + | 1311 | WP_003433550.1 | phage tail sheath family protein | - |
| CDIF29632_RS08175 () | 1705161..1705631 | + | 471 | WP_003429851.1 | phage tail tube protein | - |
| CDIF29632_RS08180 () | 1705703..1706143 | + | 441 | WP_003429853.1 | phage portal protein | - |
| CDIF29632_RS08190 () | 1706484..1706645 | + | 162 | WP_003429855.1 | hypothetical protein | Toxin Detail |
| - () | 1706565..1706698 | - | 134 | NuclAT_3 | - | Antitoxin Detail |
| - () | 1706565..1706698 | - | 134 | NuclAT_4 | - | Antitoxin Detail |
| - () | 1707043..1707091 | - | 49 | NuclAT_8 | - | - |
| - () | 1707043..1707091 | - | 49 | NuclAT_9 | - | - |
| CDIF29632_RS08195 () | 1707970..1708545 | + | 576 | WP_043897361.1 | SHOCT domain-containing protein | - |
| CDIF29632_RS08200 () | 1708849..1709022 | + | 174 | WP_003433557.1 | hypothetical protein | - |
| CDIF29632_RS19540 () | 1709146..1709973 | + | 828 | WP_003433559.1 | hypothetical protein | - |
| CDIF29632_RS19545 () | 1710022..1710198 | + | 177 | WP_003433561.1 | hypothetical protein | - |
| CDIF29632_RS08210 () | 1710629..1711189 | + | 561 | WP_021387709.1 | ribosomal protein L7/L12 | - |
| CDIF29632_RS08215 () | 1711265..1713631 | + | 2367 | WP_003433567.1 | tape measure protein | - |
| CDIF29632_RS08220 () | 1713647..1714348 | + | 702 | WP_003433569.1 | LysM peptidoglycan-binding domain-containing protein | - |
| CDIF29632_RS08225 () | 1714341..1716305 | + | 1965 | WP_003433571.1 | Murein DD-endopeptidase MepH | VF |
| CDIF29632_RS08230 () | 1716319..1716579 | + | 261 | WP_003433573.1 | DUF2577 domain-containing protein | - |
| CDIF29632_RS08235 () | 1716584..1717003 | + | 420 | WP_003433575.1 | DUF2634 domain-containing protein | - |
| CDIF29632_RS08240 () | 1717004..1718050 | + | 1047 | WP_032512186.1 | baseplate J/gp47 family protein | - |
| CDIF29632_RS08245 () | 1718043..1718660 | + | 618 | WP_003433579.1 | YmfQ family protein | - |
| CDIF29632_RS08250 () | 1718672..1719664 | + | 993 | WP_021363498.1 | phage tail protein | - |
| CDIF29632_RS08255 () | 1719681..1720991 | + | 1311 | Protein_1495 | hypothetical protein | - |
| CDIF29632_RS08260 () | 1721414..1721761 | + | 348 | WP_003429875.1 | hypothetical protein | - |
| CDIF29632_RS19550 () | 1721773..1721943 | + | 171 | WP_003429877.1 | hypothetical protein | - |
| CDIF29632_RS08265 () | 1721974..1722540 | + | 567 | WP_021363499.1 | hypothetical protein | - |
| CDIF29632_RS08270 () | 1722571..1722861 | + | 291 | WP_021363500.1 | hypothetical protein | - |
| CDIF29632_RS08275 () | 1722865..1723122 | + | 258 | WP_021363501.1 | phage holin family protein | - |
| CDIF29632_RS08280 () | 1723383..1724245 | + | 863 | Protein_1501 | Abi family protein | - |
| CDIF29632_RS08285 () | 1724324..1725136 | + | 813 | WP_021387710.1 | N-acetylmuramoyl-L-alanine amidase | - |
| CDIF29632_RS08290 () | 1725293..1727584 | + | 2292 | WP_021418497.1 | Internalin-J | VF |
| CDIF29632_RS08295 () | 1727626..1727811 | - | 186 | WP_003433687.1 | hypothetical protein | - |
| CDIF29632_RS19480 () | 1728329..1728505 | - | 177 | WP_016728851.1 | hypothetical protein | - |
| CDIF29632_RS08300 () | 1729222..1729899 | + | 678 | WP_003436641.1 | manganese catalase family protein | - |
| CDIF29632_RS08305 () | 1730068..1732104 | + | 2037 | WP_011861254.1 | thioredoxin domain-containing protein | - |
| CDIF29632_RS08310 () | 1732295..1732861 | - | 567 | WP_009889452.1 | MarR family transcriptional regulator | - |
| CDIF29632_RS08315 () | 1733149..1734084 | + | 936 | WP_003436568.1 | alpha/beta hydrolase | - |
| CDIF29632_RS08320 () | 1734558..1735772 | + | 1215 | WP_021360538.1 | ISNCY family transposase ISH7A | Transposase |
| CDIF29632_RS08325 () | 1736191..1736712 | - | 522 | WP_016728855.1 | GNAT family N-acetyltransferase | - |
| CDIF29632_RS08330 () | 1737068..1737865 | + | 798 | WP_021373463.1 | 3D domain-containing protein | - |
| CDIF29632_RS08335 () | 1737975..1738565 | + | 591 | WP_003436558.1 | SGNH/GDSL hydrolase family protein | - |
| CDIF29632_RS08340 () | 1738631..1740328 | + | 1698 | WP_021359199.1 | phospho-sugar mutase | - |
| CDIF29632_RS08345 () | 1740542..1741381 | + | 840 | WP_003436555.1 | YihY/virulence factor BrkB family protein | - |
Similar MGE(s)
Similar MGE(s) is defined as other TA-related MGE(s) with Mash distance < 0.01 to this MGE.
| Detail | Organism | MGE type | Related TA | Genome accession | Coordinates | Mash distance |
|---|