MGE detailed information
MGE type: Prophage MGE length: 80153 bp
Accession: NZ_CP010888 Location: 1627875..1708027 Organism: Clostridioides difficile strain 08ACD0030 Replicon: chromosome
Accession: NZ_CP010888 Location: 1627875..1708027 Organism: Clostridioides difficile strain 08ACD0030 Replicon: chromosome
Gene structure
The 5 kb flanking regions of this MGE are displayed.
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| TW87_RS07620 () | 1624124..1625446 | - | 1323 | WP_009888874.1 | polysaccharide biosynthesis protein | - |
| TW87_RS07625 () | 1625497..1626291 | - | 795 | WP_009896027.1 | histidinol-phosphatase HisJ family protein | - |
| TW87_RS07630 () | 1626401..1627846 | + | 1446 | WP_009896029.1 | PLP-dependent aminotransferase family protein | - |
| TW87_RS07635 () | 1627875..1628084 | + | 210 | WP_003418943.1 | DUF896 domain-containing protein | - |
| TW87_RS07640 () | 1628104..1629543 | + | 1440 | WP_061364313.1 | aminopeptidase | - |
| TW87_RS07645 () | 1629783..1629968 | + | 186 | Protein_1389 | winged helix-turn-helix transcriptional regulator | - |
| TW87_RS07650 () | 1630077..1631243 | - | 1167 | WP_021361295.1 | Putative prophage phiRv2 integrase ; Integrase | Integrase |
| TW87_RS07655 () | 1631381..1631587 | - | 207 | WP_021361292.1 | hypothetical protein | - |
| TW87_RS07660 () | 1631646..1631867 | - | 222 | WP_021361293.1 | helix-turn-helix domain-containing protein | - |
| TW87_RS19970 () | 1632151..1632288 | + | 138 | WP_021362425.1 | hypothetical protein | - |
| TW87_RS07665 () | 1632325..1632720 | - | 396 | WP_015984871.1 | helix-turn-helix domain-containing protein | - |
| TW87_RS07670 () | 1632899..1633162 | + | 264 | WP_021371966.1 | transcriptional regulator | - |
| TW87_RS07675 () | 1633131..1633919 | + | 789 | WP_021371957.1 | phage antirepressor KilAC domain-containing protein | - |
| TW87_RS19590 () | 1633974..1634111 | + | 138 | WP_021371961.1 | ribbon-helix-helix domain-containing protein | - |
| TW87_RS07680 () | 1634097..1634408 | - | 312 | WP_021419500.1 | hypothetical protein | - |
| TW87_RS19975 () | 1634529..1634699 | + | 171 | WP_021364195.1 | hypothetical protein | - |
| TW87_RS07685 () | 1634702..1635340 | + | 639 | WP_021381619.1 | hypothetical protein | - |
| TW87_RS19980 () | 1635399..1635569 | + | 171 | WP_021364156.1 | hypothetical protein | - |
| TW87_RS07690 () | 1635572..1635805 | - | 234 | WP_021364181.1 | hypothetical protein | - |
| TW87_RS07695 () | 1635874..1636071 | + | 198 | WP_021364149.1 | helix-turn-helix transcriptional regulator | - |
| TW87_RS07700 () | 1636110..1636319 | + | 210 | WP_021364191.1 | hypothetical protein | - |
| TW87_RS07705 () | 1636477..1636689 | + | 213 | WP_021364179.1 | hypothetical protein | - |
| TW87_RS07710 () | 1636788..1637030 | + | 243 | WP_021362433.1 | hypothetical protein | - |
| TW87_RS07715 () | 1637114..1637623 | + | 510 | WP_021377375.1 | siphovirus Gp157 family protein | - |
| TW87_RS07720 () | 1637633..1638247 | + | 615 | WP_021362890.1 | ERF family protein | - |
| TW87_RS20070 () | 1639021..1639122 | + | 102 | Protein_1409 | replication protein | - |
| TW87_RS07730 () | 1639192..1639443 | + | 252 | WP_021362888.1 | hypothetical protein | - |
| TW87_RS07735 () | 1639460..1639807 | + | 348 | WP_021381618.1 | hypothetical protein | - |
| TW87_RS07740 () | 1639776..1639925 | + | 150 | WP_021366325.1 | hypothetical protein | - |
| TW87_RS07745 () | 1639912..1640361 | + | 450 | WP_021362885.1 | yopX family protein | - |
| TW87_RS19985 () | 1640464..1640640 | + | 177 | WP_021360988.1 | hypothetical protein | - |
| TW87_RS07755 () | 1640750..1641823 | + | 1074 | WP_021364147.1 | DNA cytosine methyltransferase | - |
| TW87_RS07760 () | 1641902..1642123 | + | 222 | WP_021364161.1 | hypothetical protein | - |
| TW87_RS07765 () | 1642120..1643124 | + | 1005 | WP_021364183.1 | nucleoid-associated protein | - |
| TW87_RS07770 () | 1643206..1643535 | + | 330 | WP_015994378.1 | hypothetical protein | - |
| TW87_RS07775 () | 1643572..1643943 | + | 372 | WP_015994379.1 | hypothetical protein | - |
| TW87_RS19990 () | 1643946..1644086 | + | 141 | WP_021372966.1 | hypothetical protein | - |
| TW87_RS07780 () | 1644201..1644542 | + | 342 | WP_021364188.1 | peptide chain release factor-like protein | - |
| TW87_RS07790 () | 1644668..1645075 | + | 408 | WP_015994383.1 | RusA family crossover junction endodeoxyribonuclease | - |
| TW87_RS07795 () | 1645177..1646025 | + | 849 | WP_015994384.1 | ORF6C domain-containing protein | - |
| TW87_RS07800 () | 1646168..1646656 | + | 489 | WP_009894737.1 | hypothetical protein | - |
| TW87_RS07805 () | 1647403..1647576 | + | 174 | WP_009894739.1 | hypothetical protein | - |
| TW87_RS07810 () | 1647576..1648187 | + | 612 | WP_009894741.1 | hypothetical protein | - |
| TW87_RS07815 () | 1648264..1648452 | + | 189 | WP_009894742.1 | hypothetical protein | - |
| TW87_RS07820 () | 1648432..1648749 | - | 318 | WP_009894743.1 | hypothetical protein | - |
| TW87_RS07825 () | 1648873..1649100 | + | 228 | WP_009894744.1 | hypothetical protein | - |
| TW87_RS07830 () | 1649170..1649862 | + | 693 | WP_009894745.1 | helix-turn-helix domain-containing protein | - |
| TW87_RS07835 () | 1649840..1651093 | + | 1254 | WP_021368519.1 | PBSX family phage terminase large subunit | - |
| TW87_RS07840 () | 1651099..1652538 | + | 1440 | WP_021369362.1 | phage portal protein | - |
| TW87_RS07845 () | 1652528..1653925 | + | 1398 | WP_021372967.1 | minor capsid protein | - |
| TW87_RS07850 () | 1653940..1654140 | + | 201 | WP_009896618.1 | hypothetical protein | - |
| TW87_RS07855 () | 1654206..1654769 | + | 564 | WP_015984841.1 | phage scaffolding protein | - |
| TW87_RS07860 () | 1654781..1655680 | + | 900 | WP_003429841.1 | phage capsid protein | - |
| TW87_RS07865 () | 1655680..1655913 | + | 234 | WP_003429842.1 | hypothetical protein | - |
| TW87_RS07870 () | 1655923..1656324 | + | 402 | WP_015984842.1 | hypothetical protein | - |
| TW87_RS07875 () | 1656318..1656665 | + | 348 | WP_015984843.1 | hypothetical protein | - |
| TW87_RS07880 () | 1656665..1657090 | + | 426 | WP_009896626.1 | HK97 gp10 family phage protein | - |
| TW87_RS07885 () | 1657083..1657520 | + | 438 | WP_009901457.1 | hypothetical protein | - |
| TW87_RS07890 () | 1657513..1657689 | + | 177 | WP_021368348.1 | hypothetical protein | - |
| TW87_RS07895 () | 1657690..1659000 | + | 1311 | WP_015984844.1 | phage tail sheath family protein | - |
| TW87_RS07900 () | 1659022..1659492 | + | 471 | WP_015984845.1 | phage tail tube protein | - |
| TW87_RS07905 () | 1659545..1659802 | + | 258 | WP_015984846.1 | hypothetical protein | - |
| TW87_RS07910 () | 1659807..1660247 | + | 441 | WP_015984847.1 | hypothetical protein | - |
| TW87_RS19995 () | 1660568..1660729 | + | 162 | WP_009901465.1 | hypothetical protein | Toxin Detail |
| - () | 1660649..1660788 | - | 140 | NuclAT_7 | - | Antitoxin Detail |
| - () | 1660649..1660788 | - | 140 | NuclAT_8 | - | Antitoxin Detail |
| - () | 1661133..1661238 | - | 106 | NuclAT_4 | - | - |
| - () | 1661133..1661238 | - | 106 | NuclAT_5 | - | - |
| TW87_RS07920 () | 1661992..1662180 | + | 189 | WP_003429858.1 | hypothetical protein | - |
| TW87_RS07925 () | 1662299..1663165 | + | 867 | WP_021378510.1 | hypothetical protein | - |
| TW87_RS20000 () | 1663218..1663373 | + | 156 | WP_021378513.1 | hypothetical protein | - |
| TW87_RS07930 () | 1663792..1664004 | - | 213 | WP_016728883.1 | helix-turn-helix transcriptional regulator | - |
| TW87_RS19690 () | 1664279..1664623 | + | 345 | Protein_1452 | ORF6N domain-containing protein | - |
| TW87_RS19695 () | 1664705..1665058 | + | 354 | WP_095206559.1 | hypothetical protein | - |
| TW87_RS20005 () | 1665091..1665243 | + | 153 | WP_021378619.1 | hypothetical protein | - |
| TW87_RS07940 () | 1666220..1666747 | + | 528 | WP_009888847.1 | DUF4352 domain-containing protein | - |
| TW87_RS07945 () | 1666886..1667653 | + | 768 | WP_021378618.1 | DUF4428 domain-containing protein | - |
| TW87_RS07950 () | 1667719..1670091 | + | 2373 | WP_021395207.1 | tape measure protein | - |
| TW87_RS07955 () | 1670107..1670802 | + | 696 | WP_021391314.1 | LysM peptidoglycan-binding domain-containing protein | - |
| TW87_RS07960 () | 1670795..1672765 | + | 1971 | WP_021378424.1 | Gamma-D-glutamyl-L-lysine dipeptidyl-peptidase | VF |
| TW87_RS07965 () | 1672779..1673039 | + | 261 | WP_009901352.1 | DUF2577 domain-containing protein | - |
| TW87_RS07970 () | 1673044..1673463 | + | 420 | WP_009896659.1 | DUF2634 domain-containing protein | - |
| TW87_RS07975 () | 1673464..1674513 | + | 1050 | WP_009896661.1 | baseplate J/gp47 family protein | - |
| TW87_RS07980 () | 1674506..1675123 | + | 618 | WP_009896663.1 | YmfQ family protein | - |
| TW87_RS07985 () | 1675135..1676160 | + | 1026 | WP_021392947.1 | phage tail protein | - |
| TW87_RS07990 () | 1676175..1677857 | + | 1683 | WP_016056337.1 | hypothetical protein | - |
| TW87_RS07995 () | 1677874..1678167 | + | 294 | WP_016056338.1 | hypothetical protein | - |
| TW87_RS08000 () | 1678167..1678349 | + | 183 | WP_016056339.1 | hypothetical protein | - |
| TW87_RS08005 () | 1678382..1679617 | + | 1236 | WP_021427043.1 | hypothetical protein | - |
| TW87_RS08010 () | 1679614..1679913 | + | 300 | WP_021381672.1 | hypothetical protein | - |
| TW87_RS08015 () | 1679915..1680052 | + | 138 | WP_021372184.1 | XkdX family protein | - |
| TW87_RS08020 () | 1680114..1680545 | + | 432 | WP_021372187.1 | phage holin family protein | - |
| TW87_RS08025 () | 1680545..1681357 | + | 813 | WP_015984863.1 | N-acetylmuramoyl-L-alanine amidase | - |
| TW87_RS08030 () | 1681438..1681800 | + | 363 | WP_015984864.1 | hypothetical protein | - |
| TW87_RS08035 () | 1681966..1682484 | + | 519 | WP_009898407.1 | hypothetical protein | - |
| TW87_RS08040 () | 1682548..1684134 | - | 1587 | WP_015984865.1 | hypothetical protein | - |
| TW87_RS08045 () | 1684110..1684631 | - | 522 | WP_009898403.1 | ImmA/IrrE family metallo-endopeptidase | - |
| TW87_RS08050 () | 1685333..1685521 | - | 189 | WP_009898401.1 | hypothetical protein | - |
| TW87_RS08055 () | 1685781..1685924 | + | 144 | WP_011861731.1 | hypothetical protein | Toxin Detail |
| - () | 1685846..1685996 | - | 151 | NuclAT_1 | - | Antitoxin Detail |
| - () | 1685850..1685996 | - | 147 | NuclAT_0 | - | - |
| TW87_RS08060 () | 1686431..1686808 | + | 378 | WP_021391346.1 | BlaI/MecI/CopY family transcriptional regulator | - |
| TW87_RS08065 () | 1686918..1687301 | + | 384 | WP_015984867.1 | BlaI/MecI/CopY family transcriptional regulator | - |
| TW87_RS08070 () | 1687486..1688070 | + | 585 | Protein_1481 | GntR family transcriptional regulator | - |
| TW87_RS08075 () | 1688096..1688509 | + | 414 | WP_009896035.1 | PTS sugar transporter subunit IIA | - |
| TW87_RS08080 () | 1688513..1689256 | + | 744 | WP_003437997.1 | membrane complex biogenesis protein, BtpA family | - |
| TW87_RS08085 () | 1689256..1689726 | + | 471 | WP_003428544.1 | PTS sugar transporter subunit IIB | - |
| TW87_RS08090 () | 1689743..1690501 | + | 759 | WP_009888882.1 | PTS sugar transporter subunit IIC | - |
| TW87_RS08095 () | 1690485..1691327 | + | 843 | WP_003418955.1 | PTS system mannose/fructose/sorbose family transporter subunit IID | - |
| TW87_RS08100 () | 1691487..1692392 | - | 906 | WP_003438004.1 | LysR family transcriptional regulator | - |
| TW87_RS08105 () | 1692754..1693488 | + | 735 | WP_003438006.1 | hypothetical protein | - |
| TW87_RS08110 () | 1693699..1694880 | + | 1182 | WP_021364392.1 | molybdopterin molybdotransferase MoeA | - |
| TW87_RS08115 () | 1694864..1695436 | + | 573 | WP_003438013.1 | molybdopterin-guanine dinucleotide biosynthesis protein B | - |
| TW87_RS08120 () | 1695555..1695830 | + | 276 | WP_003428537.1 | PTS sugar transporter subunit IIB | - |
| TW87_RS08125 () | 1696085..1697785 | + | 1701 | WP_003438014.1 | Putative multidrug export ATP-binding/permease protein | VF |
| TW87_RS08130 () | 1698148..1699335 | + | 1188 | WP_021381683.1 | membrane protein | - |
| TW87_RS08135 () | 1699395..1700558 | + | 1164 | WP_011861090.1 | amidohydrolase | - |
| TW87_RS08140 () | 1700709..1701512 | + | 804 | WP_009892895.1 | zinc transporter ZupT | - |
| TW87_RS08145 () | 1701608..1702168 | + | 561 | WP_012816089.1 | DUF2812 domain-containing protein | - |
| TW87_RS08150 () | 1702418..1703131 | + | 714 | WP_003438019.1 | Transcriptional regulatory protein YpdB | VF |
| TW87_RS08155 () | 1703125..1704504 | + | 1380 | WP_021364401.1 | ATP-binding protein | - |
| TW87_RS08160 () | 1704745..1705434 | + | 690 | WP_021364402.1 | hypothetical protein | - |
| TW87_RS08165 () | 1705655..1708027 | + | 2373 | WP_003438022.1 | formate C-acetyltransferase/glycerol dehydratase family glycyl radical enzyme | - |
| TW87_RS08170 () | 1708042..1708944 | + | 903 | WP_021364389.1 | glycyl-radical enzyme activating protein | - |
| TW87_RS08175 () | 1708964..1709515 | + | 552 | WP_003438024.1 | helix-turn-helix domain-containing protein | - |
| TW87_RS08180 () | 1709679..1710551 | + | 873 | WP_003438026.1 | metallophosphoesterase | - |
| TW87_RS08185 () | 1710715..1711695 | + | 981 | WP_003428523.1 | hypothetical protein | - |
| TW87_RS08190 () | 1712197..1712418 | + | 222 | WP_003428522.1 | hypothetical protein | - |
Similar MGE(s)
Similar MGE(s) is defined as other TA-related MGE(s) with Mash distance < 0.01 to this MGE.
| Detail | Organism | MGE type | Related TA | Genome accession | Coordinates | Mash distance |
|---|