MGE detailed information
MGE type: Prophage MGE length: 66437 bp
Accession: NC_017179 Location: 1683199..1749635 Organism: Clostridium difficile BI1 Replicon: chromosome
Accession: NC_017179 Location: 1683199..1749635 Organism: Clostridium difficile BI1 Replicon: chromosome
Gene structure
The 5 kb flanking regions of this MGE are displayed.
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| CDBI1_RS07775 () | 1678304..1679065 | + | 762 | WP_009889424.1 | M48 family metallopeptidase | - |
| CDBI1_RS07780 () | 1679596..1679835 | + | 240 | WP_003429800.1 | ACT domain-containing protein | - |
| CDBI1_RS07785 () | 1680105..1681100 | + | 996 | WP_012816147.1 | ketol-acid reductoisomerase | - |
| CDBI1_RS07790 () | 1681153..1682841 | + | 1689 | WP_009888799.1 | biosynthetic-type acetolactate synthase large subunit | - |
| CDBI1_RS07795 () | 1683199..1684329 | - | 1131 | WP_003429803.1 | site-specific integrase | - |
| CDBI1_RS07800 () | 1684408..1685115 | - | 708 | WP_009888800.1 | HIRAN domain-containing protein | - |
| CDBI1_RS07805 () | 1685128..1685997 | - | 870 | WP_009888801.1 | HipA domain-containing protein | - |
| CDBI1_RS07810 () | 1686617..1687123 | - | 507 | WP_003429804.1 | ImmA/IrrE family metallo-endopeptidase | - |
| CDBI1_RS07815 () | 1687199..1687747 | - | 549 | WP_009893126.1 | helix-turn-helix domain-containing protein | - |
| CDBI1_RS07820 () | 1687759..1688100 | - | 342 | WP_009888806.1 | XRE family transcriptional regulator | - |
| CDBI1_RS07825 () | 1688277..1688480 | + | 204 | WP_009893129.1 | helix-turn-helix domain-containing protein | - |
| CDBI1_RS07830 () | 1688528..1689337 | + | 810 | WP_009888810.1 | phage antirepressor | - |
| CDBI1_RS07835 () | 1689384..1689593 | + | 210 | WP_009888812.1 | hypothetical protein | - |
| CDBI1_RS07840 () | 1689603..1689977 | - | 375 | WP_003433505.1 | hypothetical protein | - |
| CDBI1_RS07845 () | 1690053..1690250 | + | 198 | WP_009888813.1 | helix-turn-helix transcriptional regulator | - |
| CDBI1_RS07850 () | 1690281..1690673 | + | 393 | WP_009888815.1 | helix-turn-helix domain-containing protein | - |
| CDBI1_RS07855 () | 1690654..1690803 | + | 150 | WP_003429817.1 | hypothetical protein | - |
| CDBI1_RS07860 () | 1690874..1691311 | + | 438 | WP_003433513.1 | hypothetical protein | - |
| CDBI1_RS07865 () | 1691323..1692489 | + | 1167 | WP_009888818.1 | DUF2800 domain-containing protein | - |
| CDBI1_RS07870 () | 1692504..1692839 | + | 336 | WP_009888819.1 | hypothetical protein | - |
| CDBI1_RS07875 () | 1692892..1693464 | + | 573 | WP_003429822.1 | DNA-directed RNA polymerase sigma-70 factor | - |
| CDBI1_RS07880 () | 1693487..1694059 | + | 573 | WP_003433516.1 | DUF2815 family protein | - |
| CDBI1_RS07885 () | 1694059..1696017 | + | 1959 | WP_009888821.1 | DNA polymerase | - |
| CDBI1_RS07890 () | 1696029..1698446 | + | 2418 | WP_009888822.1 | virulence-associated E family protein | - |
| CDBI1_RS07895 () | 1698728..1699054 | + | 327 | WP_003433522.1 | VRR-NUC domain-containing protein | - |
| CDBI1_RS07900 () | 1699003..1700373 | + | 1371 | WP_009888823.1 | DEAD/DEAH box helicase | - |
| CDBI1_RS07905 () | 1700397..1700534 | + | 138 | WP_009888824.1 | hypothetical protein | - |
| CDBI1_RS07910 () | 1700527..1701006 | + | 480 | WP_009888825.1 | sigma-70 region 4 domain-containing protein | - |
| CDBI1_RS07915 () | 1701289..1701838 | + | 550 | Protein_1484 | Bro-N domain-containing protein | - |
| CDBI1_RS07920 () | 1702033..1703007 | + | 975 | WP_009888827.1 | hypothetical protein | - |
| CDBI1_RS07925 () | 1703028..1703537 | + | 510 | WP_003429834.1 | hypothetical protein | - |
| CDBI1_RS07930 () | 1703607..1704299 | + | 693 | WP_009888829.1 | helix-turn-helix domain-containing protein | - |
| CDBI1_RS07935 () | 1704277..1705530 | + | 1254 | WP_012816148.1 | PBSX family phage terminase large subunit | - |
| CDBI1_RS07940 () | 1705536..1706978 | + | 1443 | WP_009888831.1 | phage portal protein | - |
| CDBI1_RS07945 () | 1706968..1708503 | + | 1536 | WP_009893134.1 | minor capsid protein | - |
| CDBI1_RS07950 () | 1708505..1708753 | + | 249 | WP_009888832.1 | hypothetical protein | - |
| CDBI1_RS07955 () | 1708821..1709384 | + | 564 | WP_009888833.1 | phage scaffolding protein | - |
| CDBI1_RS07960 () | 1709396..1710286 | + | 891 | WP_009888834.1 | hypothetical protein | - |
| CDBI1_RS07965 () | 1710305..1710538 | + | 234 | WP_009888835.1 | hypothetical protein | - |
| CDBI1_RS07970 () | 1710548..1710949 | + | 402 | WP_009888836.1 | hypothetical protein | - |
| CDBI1_RS07975 () | 1710943..1711290 | + | 348 | WP_003433540.1 | hypothetical protein | - |
| CDBI1_RS07980 () | 1711290..1711580 | + | 291 | WP_009893135.1 | HK97 gp10 family phage protein | - |
| CDBI1_RS07985 () | 1711690..1712496 | + | 807 | WP_009888838.1 | hypothetical protein | - |
| CDBI1_RS07990 () | 1712845..1713282 | + | 438 | WP_009888839.1 | hypothetical protein | - |
| CDBI1_RS07995 () | 1713275..1713451 | + | 177 | WP_009888840.1 | hypothetical protein | - |
| CDBI1_RS08000 () | 1713452..1714762 | + | 1311 | WP_009893136.1 | phage tail sheath family protein | - |
| CDBI1_RS08005 () | 1714779..1715249 | + | 471 | WP_009888842.1 | phage tail tube protein | - |
| CDBI1_RS08010 () | 1715308..1716135 | + | 828 | WP_009888843.1 | hypothetical protein | - |
| CDBI1_RS08015 () | 1716207..1716647 | + | 441 | WP_003429853.1 | phage portal protein | - |
| CDBI1_RS08020 () | 1716988..1717149 | + | 162 | WP_003429855.1 | hypothetical protein | Toxin Detail |
| - () | 1717069..1717208 | - | 140 | NuclAT_1 | - | Antitoxin Detail |
| - () | 1717069..1717208 | - | 140 | NuclAT_2 | - | Antitoxin Detail |
| - () | 1717553..1717601 | - | 49 | NuclAT_4 | - | - |
| - () | 1717553..1717601 | - | 49 | NuclAT_5 | - | - |
| CDBI1_RS08025 () | 1718486..1718674 | + | 189 | WP_003429858.1 | hypothetical protein | - |
| CDBI1_RS08030 () | 1718793..1719659 | + | 867 | WP_009888845.1 | hypothetical protein | - |
| CDBI1_RS08035 () | 1720524..1721051 | + | 528 | WP_009888847.1 | DUF4352 domain-containing protein | - |
| CDBI1_RS08040 () | 1721189..1721956 | + | 768 | WP_009888848.1 | DUF4428 domain-containing protein | - |
| CDBI1_RS08045 () | 1722022..1724394 | + | 2373 | WP_009893138.1 | tape measure protein | - |
| CDBI1_RS08050 () | 1724411..1725100 | + | 690 | WP_009888849.1 | LysM peptidoglycan-binding domain-containing protein | - |
| CDBI1_RS08055 () | 1725093..1726985 | + | 1893 | WP_009893140.1 | C40 family peptidase | - |
| CDBI1_RS08060 () | 1726999..1727259 | + | 261 | WP_009893142.1 | DUF2577 domain-containing protein | - |
| CDBI1_RS08065 () | 1727264..1727683 | + | 420 | WP_009888851.1 | DUF2634 domain-containing protein | - |
| CDBI1_RS08070 () | 1727684..1728733 | + | 1050 | WP_009888852.1 | baseplate J/gp47 family protein | - |
| CDBI1_RS08075 () | 1728726..1729343 | + | 618 | WP_003433579.1 | YmfQ family protein | - |
| CDBI1_RS08080 () | 1729355..1730380 | + | 1026 | WP_009888853.1 | phage tail protein | - |
| CDBI1_RS08085 () | 1730397..1731923 | + | 1527 | WP_009893144.1 | hypothetical protein | - |
| CDBI1_RS08090 () | 1731938..1732231 | + | 294 | WP_009889429.1 | hypothetical protein | - |
| CDBI1_RS08095 () | 1732231..1732413 | + | 183 | WP_009889431.1 | hypothetical protein | - |
| CDBI1_RS08100 () | 1732447..1733013 | + | 567 | WP_009889434.1 | hypothetical protein | - |
| CDBI1_RS08105 () | 1733044..1733334 | + | 291 | WP_009889435.1 | hypothetical protein | - |
| CDBI1_RS08110 () | 1733338..1733595 | + | 258 | WP_009889440.1 | phage holin family protein | - |
| CDBI1_RS08115 () | 1733856..1734718 | + | 863 | Protein_1524 | Abi family protein | - |
| CDBI1_RS08120 () | 1734797..1735609 | + | 813 | WP_009889444.1 | N-acetylmuramoyl-L-alanine amidase | - |
| CDBI1_RS08125 () | 1735703..1738102 | + | 2400 | WP_009893147.1 | cell wall-binding repeat-containing protein | - |
| CDBI1_RS08130 () | 1738143..1738328 | - | 186 | WP_003433687.1 | hypothetical protein | - |
| CDBI1_RS08135 () | 1739023..1739700 | + | 678 | WP_009889448.1 | manganese catalase family protein | - |
| CDBI1_RS08140 () | 1739874..1741910 | + | 2037 | WP_009889450.1 | thioredoxin domain-containing protein | - |
| CDBI1_RS08145 () | 1742101..1742667 | - | 567 | WP_009889452.1 | MarR family transcriptional regulator | - |
| CDBI1_RS08150 () | 1742951..1743478 | + | 528 | Protein_1531 | alpha/beta fold hydrolase | - |
| CDBI1_RS08155 () | 1744110..1744217 | + | 108 | WP_009889455.1 | transposase | - |
| CDBI1_RS08160 () | 1744219..1745336 | + | 1118 | Protein_1533 | IS200/IS605 family element transposase accessory protein TnpB | - |
| CDBI1_RS08165 () | 1745401..1745862 | + | 462 | WP_009889460.1 | alpha/beta hydrolase | - |
| CDBI1_RS08170 () | 1746327..1747541 | + | 1215 | WP_009893153.1 | helix-turn-helix transcriptional regulator | - |
| CDBI1_RS08175 () | 1747961..1748482 | - | 522 | WP_009889468.1 | GNAT family N-acetyltransferase | - |
| CDBI1_RS08180 () | 1748838..1749635 | + | 798 | WP_003436560.1 | 3D domain-containing protein | - |
| CDBI1_RS08185 () | 1749745..1750335 | + | 591 | WP_009893156.1 | SGNH/GDSL hydrolase family protein | - |
| CDBI1_RS08190 () | 1750401..1752098 | + | 1698 | WP_009893157.1 | phospho-sugar mutase | - |
| CDBI1_RS08195 () | 1752312..1753151 | + | 840 | WP_003436555.1 | YihY/virulence factor BrkB family protein | - |
Similar MGE(s)
Similar MGE(s) is defined as other TA-related MGE(s) with Mash distance < 0.01 to this MGE.
| Detail | Organism | MGE type | Related TA | Genome accession | Coordinates | Mash distance |
|---|---|---|---|---|---|---|
| Clostridium difficile R20291 | Prophage | TA24266 | NC_013316 | 1671047..1738184 | 0 |