MGE detailed information
MGE type: Prophage MGE length: 65636 bp
Accession: NC_009089 Location: 1078053..1143688 Organism: Clostridium difficile 630 Replicon: chromosome
Accession: NC_009089 Location: 1078053..1143688 Organism: Clostridium difficile 630 Replicon: chromosome
Gene structure
The 5 kb flanking regions of this MGE are displayed.
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| CD630_RS05045 (CD630_08920) | 1073975..1074175 | - | 201 | WP_003418660.1 | cold-shock protein | - |
| CD630_RS05050 (CD630_08930) | 1074642..1076132 | + | 1491 | WP_009888725.1 | 4Fe-4S dicluster domain-containing protein | - |
| CD630_RS05055 (CD630_08940) | 1076412..1077908 | + | 1497 | WP_009895925.1 | 4Fe-4S dicluster domain-containing protein | - |
| CD630_RS05060 (CD630_08950) | 1078053..1078967 | + | 915 | WP_011860980.1 | ComE operon protein 3 | VF |
| CD630_RS05065 (CD630_08960) | 1079085..1079276 | + | 192 | WP_003418667.1 | hypothetical protein | - |
| CD630_RS05070 (CD630_08970) | 1079499..1079849 | + | 351 | WP_003437137.1 | hypothetical protein | - |
| CD630_RS05075 (CD630_08980) | 1080111..1081616 | + | 1506 | WP_003437136.1 | DUF1846 domain-containing protein | - |
| CD630_RS05080 (CD630_08990) | 1082006..1083103 | + | 1098 | WP_011860981.1 | DNA polymerase IV | - |
| CD630_RS05085 (CD630_09000) | 1083366..1084502 | + | 1137 | WP_003437132.1 | Carnitine transport ATP-binding protein OpuCA | VF |
| CD630_RS05090 (CD630_09010) | 1084495..1086042 | + | 1548 | WP_021361803.1 | ABC transporter permease subunit | - |
| CD630_RS05095 (CD630_09020) | 1086376..1087242 | + | 867 | WP_003437125.1 | cation diffusion facilitator family transporter | - |
| CD630_RS05100 | 1087383..1088021 | + | 639 | Protein_924 | aldo/keto reductase | - |
| CD630_RS05105 (CD630_09040) | 1088175..1089293 | - | 1119 | WP_011860983.1 | Tyrosine recombinase XerC ; Integrase | Integrase |
| CD630_RS05110 (CD630_09050) | 1089801..1091465 | - | 1665 | WP_011860984.1 | DUF4041 domain-containing protein | - |
| CD630_RS05115 (CD630_09060) | 1091736..1093184 | - | 1449 | WP_011860985.1 | SAP domain-containing protein | - |
| CD630_RS05120 (CD630_09070) | 1093832..1094164 | - | 333 | WP_011860986.1 | helix-turn-helix transcriptional regulator | - |
| CD630_RS05125 (CD630_09071) | 1094326..1094514 | + | 189 | WP_011860987.1 | helix-turn-helix transcriptional regulator | - |
| CD630_RS05130 (CD630_09080) | 1094548..1095342 | + | 795 | WP_011860988.1 | ORF6N domain-containing protein | - |
| CD630_RS05135 (CD630_09090) | 1095404..1095604 | + | 201 | WP_011860989.1 | hypothetical protein | - |
| CD630_RS05140 (CD630_09100) | 1095643..1096212 | - | 570 | WP_022583275.1 | hypothetical protein | - |
| CD630_RS05145 (CD630_09110) | 1096282..1096479 | + | 198 | WP_011860991.1 | helix-turn-helix transcriptional regulator | - |
| CD630_RS05150 (CD630_09120) | 1096496..1096825 | + | 330 | WP_011860992.1 | helix-turn-helix domain-containing protein | - |
| CD630_RS05155 (CD630_09130) | 1096927..1097115 | + | 189 | WP_011860993.1 | hypothetical protein | - |
| CD630_RS05160 (CD630_09140) | 1097131..1097343 | + | 213 | WP_022583264.1 | hypothetical protein | - |
| CD630_RS05165 (CD630_09150) | 1097442..1097684 | + | 243 | WP_011860995.1 | hypothetical protein | - |
| CD630_RS05170 (CD630_09160) | 1097768..1098283 | + | 516 | WP_011860996.1 | siphovirus Gp157 family protein | - |
| CD630_RS05175 (CD630_09170) | 1098285..1099187 | + | 903 | WP_011860997.1 | phage recombination protein Bet | - |
| CD630_RS05180 (CD630_09180) | 1099200..1100039 | + | 840 | WP_011860998.1 | hypothetical protein | - |
| CD630_RS05185 (CD630_09190) | 1100110..1100364 | + | 255 | WP_011860999.1 | hypothetical protein | - |
| CD630_RS05190 (CD630_09200) | 1100438..1100701 | + | 264 | WP_011861000.1 | hypothetical protein | - |
| CD630_RS05195 (CD630_09210) | 1100713..1101063 | + | 351 | WP_011861001.1 | hypothetical protein | - |
| CD630_RS05200 (CD630_09220) | 1101067..1101447 | + | 381 | WP_011861002.1 | hypothetical protein | - |
| CD630_RS19675 (CD630_09230) | 1101416..1101577 | + | 162 | WP_021362052.1 | hypothetical protein | - |
| CD630_RS05205 (CD630_09231) | 1101552..1101710 | + | 159 | WP_011861004.1 | hypothetical protein | - |
| CD630_RS05210 (CD630_09240) | 1101707..1101880 | + | 174 | WP_011861005.1 | DUF3797 domain-containing protein | - |
| CD630_RS05215 (CD630_09250) | 1101998..1102333 | + | 336 | WP_011861007.1 | hypothetical protein | - |
| CD630_RS05220 (CD630_09260) | 1102433..1102708 | + | 276 | WP_011861008.1 | hypothetical protein | - |
| CD630_RS05225 (CD630_09270) | 1102804..1103877 | + | 1074 | WP_011861009.1 | DNA cytosine methyltransferase | - |
| CD630_RS05230 (CD630_09280) | 1103957..1104166 | + | 210 | WP_011861010.1 | hypothetical protein | - |
| CD630_RS05235 (CD630_09290) | 1104178..1105173 | + | 996 | WP_011861011.1 | nucleoid-associated protein | - |
| CD630_RS05240 (CD630_09300) | 1105182..1105907 | + | 726 | WP_011861012.1 | phosphoadenosine phosphosulfate reductase family protein | - |
| CD630_RS19680 (CD630_09301) | 1105904..1106077 | + | 174 | WP_011861013.1 | hypothetical protein | - |
| CD630_RS05245 (CD630_09310) | 1106070..1106441 | + | 372 | WP_011861014.1 | hypothetical protein | - |
| CD630_RS05250 (CD630_09320) | 1106444..1106911 | + | 468 | WP_011861015.1 | hypothetical protein | - |
| CD630_RS05255 (CD630_09330) | 1106990..1107175 | + | 186 | WP_011861016.1 | hypothetical protein | - |
| CD630_RS05260 (CD630_09340) | 1107189..1107428 | + | 240 | WP_015981545.1 | hypothetical protein | - |
| CD630_RS05265 (CD630_09350) | 1107557..1108363 | + | 807 | WP_011861019.1 | DNA adenine methylase | - |
| CD630_RS05270 (CD630_09360) | 1108377..1108784 | + | 408 | WP_011861020.1 | RusA family crossover junction endodeoxyribonuclease | - |
| CD630_RS05275 (CD630_09370) | 1108799..1109524 | + | 726 | WP_011861021.1 | phage antirepressor Ant | - |
| CD630_RS05280 (CD630_09380) | 1109618..1110106 | + | 489 | WP_011861022.1 | hypothetical protein | - |
| CD630_RS19685 (CD630_09390) | 1110854..1111027 | + | 174 | WP_009894739.1 | hypothetical protein | - |
| CD630_RS05285 (CD630_09400) | 1111027..1111638 | + | 612 | WP_009894741.1 | hypothetical protein | - |
| CD630_RS05290 (CD630_09401) | 1111715..1111903 | + | 189 | WP_009894742.1 | hypothetical protein | - |
| CD630_RS05295 (CD630_09410) | 1111883..1112200 | - | 318 | WP_009894743.1 | hypothetical protein | - |
| CD630_RS05300 (CD630_09420) | 1112324..1112551 | + | 228 | WP_009894744.1 | hypothetical protein | - |
| CD630_RS05305 (CD630_09430) | 1112621..1113313 | + | 693 | WP_011861025.1 | helix-turn-helix domain-containing protein | - |
| CD630_RS05310 (CD630_09440) | 1113291..1114544 | + | 1254 | WP_003433530.1 | PBSX family phage terminase large subunit | - |
| CD630_RS05315 (CD630_09450) | 1114550..1115989 | + | 1440 | WP_011861027.1 | phage portal protein | - |
| CD630_RS05320 (CD630_09460) | 1115979..1117472 | + | 1494 | WP_003429838.1 | minor capsid protein | - |
| CD630_RS05325 (CD630_09461) | 1117438..1117680 | + | 243 | WP_009901430.1 | hypothetical protein | - |
| CD630_RS05330 (CD630_09470) | 1117990..1118553 | + | 564 | WP_011861028.1 | phage scaffolding protein | - |
| CD630_RS05335 (CD630_09480) | 1118565..1119464 | + | 900 | WP_011861029.1 | phage capsid protein | - |
| CD630_RS05340 (CD630_09490) | 1119464..1119697 | + | 234 | WP_009896624.1 | hypothetical protein | - |
| CD630_RS05345 (CD630_09500) | 1119707..1120108 | + | 402 | WP_009888836.1 | hypothetical protein | - |
| CD630_RS05350 (CD630_09510) | 1120102..1120449 | + | 348 | WP_003429844.1 | hypothetical protein | - |
| CD630_RS05355 (CD630_09520) | 1120449..1120874 | + | 426 | WP_011861030.1 | HK97 gp10 family phage protein | - |
| CD630_RS05360 (CD630_09530) | 1120867..1121304 | + | 438 | WP_009901504.1 | hypothetical protein | - |
| CD630_RS19690 (CD630_09531) | 1121297..1121473 | + | 177 | WP_011861031.1 | hypothetical protein | - |
| CD630_RS05365 (CD630_09540) | 1121475..1122785 | + | 1311 | WP_011861032.1 | phage tail sheath family protein | - |
| CD630_RS05370 (CD630_09550) | 1122802..1123272 | + | 471 | WP_003429851.1 | phage tail tube protein | - |
| CD630_RS05375 (CD630_09560) | 1123344..1123784 | + | 441 | WP_003429853.1 | phage portal protein | - |
| CD630_RS19695 (CD630_09562) | 1124125..1124286 | + | 162 | WP_003429855.1 | hypothetical protein | Toxin Detail |
| - | 1124206..1124339 | - | 134 | - | - | Antitoxin Detail |
| CD630_RS05385 (CD630_09570) | 1125950..1126510 | + | 561 | WP_011861034.1 | lipoprotein | - |
| CD630_RS05390 (CD630_09580) | 1126554..1127123 | + | 570 | WP_011861035.1 | zinc-ribbon domain-containing protein | - |
| CD630_RS05395 (CD630_09590) | 1127194..1129545 | + | 2352 | WP_011861036.1 | tape measure protein | - |
| CD630_RS05400 (CD630_09600) | 1129561..1130250 | + | 690 | WP_011861037.1 | LysM peptidoglycan-binding domain-containing protein | - |
| CD630_RS05405 (CD630_09610) | 1130243..1132213 | + | 1971 | WP_011861038.1 | hypothetical protein | VF |
| CD630_RS05410 (CD630_09620) | 1132227..1132487 | + | 261 | WP_009901352.1 | DUF2577 domain-containing protein | - |
| CD630_RS05415 (CD630_09630) | 1132492..1132911 | + | 420 | WP_011861039.1 | DUF2634 domain-containing protein | - |
| CD630_RS05420 (CD630_09640) | 1132912..1133961 | + | 1050 | WP_011861040.1 | baseplate J/gp47 family protein | - |
| CD630_RS05425 (CD630_09650) | 1133954..1134571 | + | 618 | WP_011861041.1 | YmfQ family protein | - |
| CD630_RS05430 (CD630_09660) | 1134583..1135386 | + | 804 | WP_011861042.1 | phage tail protein | - |
| CD630_RS05435 (CD630_09670) | 1135404..1137101 | + | 1698 | WP_021413561.1 | glycine rich family protein | - |
| CD630_RS05440 (CD630_09680) | 1137118..1137411 | + | 294 | WP_011861044.1 | hypothetical protein | - |
| CD630_RS05445 (CD630_09690) | 1137411..1137593 | + | 183 | WP_011861045.1 | hypothetical protein | - |
| CD630_RS05450 (CD630_09700) | 1137628..1137858 | + | 231 | WP_011861046.1 | hemolysin XhlA family protein | - |
| CD630_RS05455 (CD630_09710) | 1137878..1138138 | + | 261 | WP_011861047.1 | phage holin family protein | - |
| CD630_RS05460 (CD630_09720) | 1138135..1138950 | + | 816 | WP_011861048.1 | N-acetylmuramoyl-L-alanine amidase | - |
| CD630_RS05465 (CD630_09730) | 1138967..1139263 | + | 297 | WP_011861049.1 | hypothetical protein | - |
| CD630_RS05470 (CD630_09750) | 1139809..1140372 | + | 564 | WP_021371073.1 | hypothetical protein | - |
| CD630_RS05475 (CD630_09760) | 1140390..1140821 | + | 432 | WP_011861052.1 | protein-export chaperone SecB | - |
| CD630_RS05480 (CD630_09770) | 1140823..1141527 | + | 705 | WP_011861053.1 | hypothetical protein | - |
| CD630_RS05485 (CD630_09772) | 1141775..1141963 | - | 189 | WP_009898401.1 | hypothetical protein | - |
| CD630_RS19700 (CD630_09771) | 1142224..1142367 | + | 144 | WP_011861054.1 | hypothetical protein | Toxin Detail |
| CD630_RS05490 (CD630_09780) | 1142981..1143262 | + | 282 | WP_009898394.1 | BlaI/MecI/CopY family transcriptional regulator | - |
| CD630_RS05495 (CD630_09790) | 1143302..1143688 | + | 387 | WP_011861055.1 | BlaI/MecI/CopY family transcriptional regulator | - |
| CD630_RS05500 | 1143874..1144398 | + | 525 | Protein_1009 | 4Fe-4S dicluster domain-containing protein | - |
| CD630_RS05505 (CD630_09810) | 1144782..1146020 | + | 1239 | WP_011861056.1 | hypothetical protein | - |
| CD630_RS05510 (CD630_09820) | 1146049..1146936 | + | 888 | WP_011861057.1 | decaprenyl-phosphate phosphoribosyltransferase | - |
| CD630_RS05515 (CD630_09830) | 1146970..1147599 | + | 630 | WP_011861058.1 | HAD-IB family hydrolase | - |
| CD630_RS05520 (CD630_09840) | 1147604..1148068 | + | 465 | WP_003437111.1 | small multi-drug export protein | - |
Similar MGE(s)
Similar MGE(s) is defined as other TA-related MGE(s) with Mash distance < 0.01 to this MGE.
| Detail | Organism | MGE type | Related TA | Genome accession | Coordinates | Mash distance |
|---|---|---|---|---|---|---|
| Clostridioides difficile 630 | Prophage | TA53077, TA53081 | NZ_CP010905 | 1056256..1128312 | 0.003 | |
| Clostridioides difficile strain 630 delta erm | Prophage | TA64399, TA64403 | NZ_CP016318 | 1076912..1148967 | 0.003 | |
| Clostridioides difficile strain 630Derm | Prophage | TA285464, TA285467 | NZ_LN614756 | 1076912..1148967 | 0.003 |