MGE detailed information
MGE type: Prophage MGE length: 48181 bp
Accession: NZ_CP016318 Location: 3337899..3386079 Organism: Clostridioides difficile strain 630 delta erm Replicon: chromosome
Accession: NZ_CP016318 Location: 3337899..3386079 Organism: Clostridioides difficile strain 630 delta erm Replicon: chromosome
Gene structure
The 5 kb flanking regions of this MGE are displayed.
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| CDIF630erm_RS15700 () | 3333085..3334239 | + | 1155 | WP_003439713.1 | GGDEF domain-containing protein | - |
| CDIF630erm_RS15705 () | 3334320..3336038 | - | 1719 | WP_011861730.1 | putative 2-aminoethylphosphonate ABC transporter permease subunit | - |
| CDIF630erm_RS15710 () | 3336043..3336924 | - | 882 | Protein_2956 | ATP-binding cassette domain-containing protein | - |
| - () | 3337426..3337572 | + | 147 | NuclAT_2 | - | - |
| - () | 3337426..3337576 | + | 151 | NuclAT_1 | - | - |
| CDIF630erm_RS20760 () | 3337498..3337641 | - | 144 | WP_011861731.1 | hypothetical protein | - |
| CDIF630erm_RS15720 () | 3337899..3338087 | + | 189 | WP_009898401.1 | hypothetical protein | - |
| CDIF630erm_RS15725 () | 3338334..3339038 | - | 705 | WP_011861732.1 | hypothetical protein | - |
| CDIF630erm_RS15730 () | 3339040..3339471 | - | 432 | WP_011861052.1 | protein-export chaperone SecB | - |
| CDIF630erm_RS15735 () | 3339489..3340085 | - | 597 | WP_011861051.1 | hypothetical protein | - |
| CDIF630erm_RS15740 () | 3340598..3340894 | - | 297 | WP_011861049.1 | hypothetical protein | - |
| CDIF630erm_RS15745 () | 3340911..3341726 | - | 816 | WP_011861048.1 | N-acetylmuramoyl-L-alanine amidase | - |
| CDIF630erm_RS15750 () | 3341723..3341983 | - | 261 | WP_011861047.1 | phage holin family protein | - |
| CDIF630erm_RS15755 () | 3342003..3342233 | - | 231 | WP_011861046.1 | hemolysin XhlA family protein | - |
| CDIF630erm_RS15760 () | 3342268..3342450 | - | 183 | WP_011861045.1 | hypothetical protein | - |
| CDIF630erm_RS15765 () | 3342450..3342743 | - | 294 | WP_011861044.1 | hypothetical protein | - |
| CDIF630erm_RS15770 () | 3342760..3344457 | - | 1698 | WP_021413561.1 | glycine rich family protein | - |
| CDIF630erm_RS15775 () | 3344475..3345278 | - | 804 | WP_011861042.1 | phage tail protein | - |
| CDIF630erm_RS15780 () | 3345290..3345907 | - | 618 | WP_011861041.1 | YmfQ family protein | - |
| CDIF630erm_RS15785 () | 3345900..3346949 | - | 1050 | WP_011861040.1 | baseplate J/gp47 family protein | - |
| CDIF630erm_RS15790 () | 3346950..3347369 | - | 420 | WP_011861039.1 | DUF2634 domain-containing protein | - |
| CDIF630erm_RS15795 () | 3347374..3347634 | - | 261 | WP_009901352.1 | DUF2577 domain-containing protein | - |
| CDIF630erm_RS15800 () | 3347648..3349618 | - | 1971 | WP_011861038.1 | Gamma-D-glutamyl-L-lysine dipeptidyl-peptidase | VF |
| CDIF630erm_RS15805 () | 3349611..3350300 | - | 690 | WP_011861037.1 | LysM peptidoglycan-binding domain-containing protein | - |
| CDIF630erm_RS15810 () | 3350316..3352667 | - | 2352 | WP_011861036.1 | tape measure protein | - |
| CDIF630erm_RS15815 () | 3352738..3353307 | - | 570 | WP_011861035.1 | zinc-ribbon domain-containing protein | - |
| CDIF630erm_RS15820 () | 3353351..3353911 | - | 561 | WP_011861034.1 | lipoprotein | - |
| - () | 3355072..3355177 | + | 106 | NuclAT_12 | - | - |
| - () | 3355072..3355177 | + | 106 | NuclAT_14 | - | - |
| - () | 3355522..3355655 | + | 134 | NuclAT_6 | - | Antitoxin Detail |
| - () | 3355522..3355655 | + | 134 | NuclAT_8 | - | Antitoxin Detail |
| CDIF630erm_RS20765 () | 3355575..3355736 | - | 162 | WP_003429855.1 | hypothetical protein | Toxin Detail |
| CDIF630erm_RS15835 () | 3356077..3356517 | - | 441 | WP_003429853.1 | phage portal protein | - |
| CDIF630erm_RS15840 () | 3356589..3357059 | - | 471 | WP_003429851.1 | phage tail tube protein | - |
| CDIF630erm_RS15845 () | 3357076..3358386 | - | 1311 | WP_011861032.1 | phage tail sheath family protein | - |
| CDIF630erm_RS20770 () | 3358388..3358564 | - | 177 | WP_011861031.1 | hypothetical protein | - |
| CDIF630erm_RS15855 () | 3358557..3358994 | - | 438 | WP_009901504.1 | hypothetical protein | - |
| CDIF630erm_RS15860 () | 3358987..3359412 | - | 426 | WP_011861030.1 | HK97 gp10 family phage protein | - |
| CDIF630erm_RS15865 () | 3359412..3359759 | - | 348 | WP_003429844.1 | hypothetical protein | - |
| CDIF630erm_RS15870 () | 3359753..3360154 | - | 402 | WP_009888836.1 | hypothetical protein | - |
| CDIF630erm_RS15875 () | 3360164..3360397 | - | 234 | WP_009896624.1 | hypothetical protein | - |
| CDIF630erm_RS15880 () | 3360397..3361296 | - | 900 | WP_011861029.1 | phage capsid protein | - |
| CDIF630erm_RS15885 () | 3361308..3361871 | - | 564 | WP_011861028.1 | phage scaffolding protein | - |
| CDIF630erm_RS15890 () | 3362181..3362423 | - | 243 | WP_009901430.1 | hypothetical protein | - |
| CDIF630erm_RS15895 () | 3362389..3363882 | - | 1494 | WP_003429838.1 | minor capsid protein | - |
| CDIF630erm_RS15900 () | 3363872..3365311 | - | 1440 | WP_011861027.1 | phage portal protein | - |
| CDIF630erm_RS15905 () | 3365317..3366570 | - | 1254 | WP_003433530.1 | PBSX family phage terminase large subunit | - |
| CDIF630erm_RS15910 () | 3366548..3367240 | - | 693 | WP_011861025.1 | helix-turn-helix domain-containing protein | - |
| CDIF630erm_RS15915 () | 3367310..3367537 | - | 228 | WP_009894744.1 | hypothetical protein | - |
| CDIF630erm_RS15920 () | 3367661..3367978 | + | 318 | WP_009894743.1 | hypothetical protein | - |
| CDIF630erm_RS15925 () | 3367958..3368146 | - | 189 | WP_009894742.1 | hypothetical protein | - |
| CDIF630erm_RS15930 () | 3368223..3368834 | - | 612 | WP_009894741.1 | hypothetical protein | - |
| CDIF630erm_RS20775 () | 3368834..3369007 | - | 174 | WP_009894739.1 | hypothetical protein | - |
| CDIF630erm_RS15945 () | 3369826..3370989 | - | 1164 | WP_032506905.1 | XRE family transcriptional regulator | - |
| CDIF630erm_RS15950 () | 3371008..3371763 | - | 756 | WP_011861735.1 | hypothetical protein | - |
| CDIF630erm_RS15960 () | 3372084..3372572 | - | 489 | WP_011861022.1 | hypothetical protein | - |
| CDIF630erm_RS15965 () | 3372666..3373406 | - | 741 | WP_011861736.1 | anti-repressor protein | - |
| CDIF630erm_RS15970 () | 3373469..3373876 | - | 408 | WP_011861737.1 | RusA family crossover junction endodeoxyribonuclease | - |
| CDIF630erm_RS15975 () | 3373866..3374264 | - | 399 | WP_011861738.1 | hypothetical protein | - |
| CDIF630erm_RS15985 () | 3374407..3374733 | - | 327 | WP_011861739.1 | peptide chain release factor-like protein | - |
| CDIF630erm_RS15990 () | 3374804..3375175 | - | 372 | WP_011861740.1 | hypothetical protein | - |
| CDIF630erm_RS20780 () | 3375168..3375341 | - | 174 | WP_011861741.1 | hypothetical protein | - |
| CDIF630erm_RS16000 () | 3375350..3375733 | - | 384 | WP_011861742.1 | DUF1653 domain-containing protein | - |
| CDIF630erm_RS16005 () | 3375745..3376740 | - | 996 | WP_011861743.1 | nucleoid-associated protein | - |
| CDIF630erm_RS16010 () | 3376835..3377110 | - | 276 | WP_011861744.1 | hypothetical protein | - |
| CDIF630erm_RS20515 () | 3377162..3377320 | - | 159 | WP_018112752.1 | hypothetical protein | - |
| CDIF630erm_RS16020 () | 3377439..3377612 | - | 174 | WP_021359693.1 | DUF3797 domain-containing protein | - |
| CDIF630erm_RS20785 () | 3377609..3377749 | - | 141 | WP_021359694.1 | hypothetical protein | - |
| CDIF630erm_RS16030 () | 3377718..3378098 | - | 381 | WP_011861745.1 | hypothetical protein | - |
| CDIF630erm_RS16035 () | 3378102..3378467 | - | 366 | WP_021398171.1 | hypothetical protein | - |
| CDIF630erm_RS16040 () | 3378464..3378727 | - | 264 | WP_011861747.1 | hypothetical protein | - |
| CDIF630erm_RS16045 () | 3378801..3379217 | - | 417 | WP_011861748.1 | single-stranded DNA-binding protein | - |
| CDIF630erm_RS16050 () | 3379233..3379406 | - | 174 | WP_011861749.1 | resolvase | - |
| CDIF630erm_RS16055 () | 3379466..3380416 | - | 951 | WP_011861750.1 | DnaD domain protein | - |
| CDIF630erm_RS16060 () | 3380425..3381015 | - | 591 | WP_011861751.1 | ERF family protein | - |
| CDIF630erm_RS16065 () | 3381025..3381534 | - | 510 | WP_011861752.1 | siphovirus Gp157 family protein | - |
| CDIF630erm_RS16070 () | 3381620..3381937 | - | 318 | WP_011861753.1 | hypothetical protein | - |
| CDIF630erm_RS16075 () | 3382037..3382264 | - | 228 | WP_021391119.1 | hypothetical protein | - |
| CDIF630erm_RS16080 () | 3382239..3382427 | - | 189 | WP_011861755.1 | hypothetical protein | - |
| CDIF630erm_RS16085 () | 3382493..3383287 | - | 795 | WP_011861756.1 | ORF6N domain-containing protein | - |
| CDIF630erm_RS16090 () | 3383335..3383556 | - | 222 | WP_011861757.1 | helix-turn-helix transcriptional regulator | - |
| CDIF630erm_RS16095 () | 3383710..3384165 | + | 456 | WP_011861758.1 | helix-turn-helix transcriptional regulator | - |
| CDIF630erm_RS16100 () | 3384183..3384656 | + | 474 | WP_011861759.1 | ImmA/IrrE family metallo-endopeptidase | - |
| CDIF630erm_RS16105 () | 3384721..3386079 | + | 1359 | WP_011861760.1 | Tn3 family transposase TnpR_TnShfr1 | Transposase |
| CDIF630erm_RS20460 () | 3386102..3386218 | - | 117 | Protein_3032 | putative 2-aminoethylphosphonate ABC transporter ATP-binding protein | - |
| CDIF630erm_RS16110 () | 3386314..3387363 | - | 1050 | WP_011861761.1 | putative 2-aminoethylphosphonate ABC transporter substrate-binding protein | - |
| CDIF630erm_RS16115 () | 3387640..3388308 | - | 669 | WP_009891221.1 | V-type ATP synthase subunit D | - |
| CDIF630erm_RS16120 () | 3388314..3389687 | - | 1374 | WP_003422669.1 | V-type ATP synthase subunit B | - |
Similar MGE(s)
Similar MGE(s) is defined as other TA-related MGE(s) with Mash distance < 0.01 to this MGE.
| Detail | Organism | MGE type | Related TA | Genome accession | Coordinates | Mash distance |
|---|---|---|---|---|---|---|
| Clostridium difficile 630 | Prophage | TA10081, TA10084, TA10172 | NC_009089 | 3375898..3428859 | 0.002 |