MGE detailed information
MGE type: Prophage MGE length: 63585 bp
Accession: NZ_CP020424 Location: 1876777..1940361 Organism: Clostridioides difficile strain FDAARGOS_267 Replicon: chromosome
Accession: NZ_CP020424 Location: 1876777..1940361 Organism: Clostridioides difficile strain FDAARGOS_267 Replicon: chromosome
Gene structure
The 5 kb flanking regions of this MGE are displayed.
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| A6J95_RS08680 () | 1872032..1872268 | + | 237 | WP_003425320.1 | hypothetical protein | - |
| A6J95_RS08685 () | 1872397..1872963 | - | 567 | WP_003420939.1 | chromate transporter | - |
| A6J95_RS08690 () | 1872960..1873523 | - | 564 | WP_009895294.1 | chromate transporter | - |
| A6J95_RS08695 () | 1873643..1874518 | + | 876 | WP_009895293.1 | LysR family transcriptional regulator | - |
| A6J95_RS08700 () | 1874666..1876096 | - | 1431 | WP_009895291.1 | metallophosphoesterase | - |
| A6J95_RS08710 () | 1876777..1877157 | - | 381 | WP_009901722.1 | BlaI/MecI/CopY family transcriptional regulator | - |
| A6J95_RS08715 () | 1877250..1877639 | - | 390 | WP_009901721.1 | BlaI/MecI/CopY family transcriptional regulator | - |
| A6J95_RS20345 () | 1878394..1878570 | - | 177 | WP_009898399.1 | hypothetical protein | - |
| A6J95_RS08725 () | 1878823..1879011 | + | 189 | WP_009898401.1 | hypothetical protein | - |
| A6J95_RS08730 () | 1879713..1880234 | + | 522 | WP_009898403.1 | ImmA/IrrE family metallo-endopeptidase | - |
| A6J95_RS08735 () | 1880210..1881796 | + | 1587 | WP_015984865.1 | hypothetical protein | - |
| A6J95_RS08740 () | 1881860..1882378 | - | 519 | WP_009898407.1 | hypothetical protein | - |
| A6J95_RS08745 () | 1882544..1882906 | - | 363 | WP_015984864.1 | hypothetical protein | - |
| A6J95_RS08750 () | 1882987..1883799 | - | 813 | WP_021359648.1 | N-acetylmuramoyl-L-alanine amidase | - |
| A6J95_RS08755 () | 1883799..1884290 | - | 492 | WP_074048375.1 | phage holin family protein | - |
| A6J95_RS08760 () | 1884298..1884516 | - | 219 | WP_009894435.1 | hypothetical protein | - |
| A6J95_RS08765 () | 1884612..1884794 | - | 183 | WP_009899649.1 | hypothetical protein | - |
| A6J95_RS08770 () | 1884794..1885087 | - | 294 | WP_009896669.1 | hypothetical protein | - |
| A6J95_RS08775 () | 1885103..1886791 | - | 1689 | WP_009901440.1 | hypothetical protein | - |
| A6J95_RS08780 () | 1886806..1887831 | - | 1026 | WP_018112716.1 | phage tail protein | - |
| A6J95_RS08785 () | 1887843..1888460 | - | 618 | WP_009896663.1 | YmfQ family protein | - |
| A6J95_RS08790 () | 1888453..1889502 | - | 1050 | WP_018112717.1 | baseplate J/gp47 family protein | - |
| A6J95_RS08795 () | 1889503..1889922 | - | 420 | WP_011861039.1 | DUF2634 domain-containing protein | - |
| A6J95_RS08800 () | 1889927..1890187 | - | 261 | WP_009901352.1 | DUF2577 domain-containing protein | - |
| A6J95_RS08805 () | 1890201..1892171 | - | 1971 | WP_018112718.1 | Gamma-D-glutamyl-L-lysine dipeptidyl-peptidase | VF |
| A6J95_RS08810 () | 1892164..1892853 | - | 690 | WP_009901477.1 | LysM peptidoglycan-binding domain-containing protein | - |
| A6J95_RS08815 () | 1892869..1895238 | - | 2370 | WP_009901478.1 | tape measure protein | - |
| A6J95_RS08820 () | 1895305..1896075 | - | 771 | WP_018112719.1 | SHOCT domain-containing protein | - |
| A6J95_RS20350 () | 1896204..1896371 | - | 168 | WP_018112720.1 | hypothetical protein | - |
| A6J95_RS20355 () | 1896426..1897253 | - | 828 | WP_018112721.1 | toxin Bro | - |
| A6J95_RS08835 () | 1897377..1897550 | - | 174 | WP_018112722.1 | hypothetical protein | - |
| - () | 1898372..1898477 | + | 106 | NuclAT_4 | - | - |
| - () | 1898372..1898477 | + | 106 | NuclAT_5 | - | - |
| - () | 1898822..1898955 | + | 134 | NuclAT_1 | - | Antitoxin Detail |
| - () | 1898822..1898955 | + | 134 | NuclAT_2 | - | Antitoxin Detail |
| A6J95_RS08840 () | 1898875..1899036 | - | 162 | WP_003429855.1 | hypothetical protein | Toxin Detail |
| A6J95_RS08850 () | 1899377..1899817 | - | 441 | WP_018112723.1 | phage portal protein | - |
| A6J95_RS08855 () | 1899886..1900362 | - | 477 | WP_018112724.1 | phage tail tube protein | - |
| A6J95_RS08860 () | 1900383..1901693 | - | 1311 | WP_009896640.1 | phage tail sheath family protein | - |
| A6J95_RS08865 () | 1901694..1901870 | - | 177 | WP_009896638.1 | hypothetical protein | - |
| A6J95_RS08870 () | 1901863..1902300 | - | 438 | WP_018112725.1 | hypothetical protein | - |
| A6J95_RS08875 () | 1902293..1902718 | - | 426 | WP_018112726.1 | HK97 gp10 family phage protein | - |
| A6J95_RS08880 () | 1902718..1903080 | - | 363 | WP_018112727.1 | hypothetical protein | - |
| A6J95_RS08885 () | 1903080..1903424 | - | 345 | WP_018112728.1 | phage head-tail connector protein | - |
| A6J95_RS08890 () | 1903435..1904454 | - | 1020 | WP_018112729.1 | major capsid protein | - |
| A6J95_RS08895 () | 1904466..1904846 | - | 381 | WP_018112730.1 | hypothetical protein | - |
| A6J95_RS08900 () | 1904862..1905434 | - | 573 | WP_018112731.1 | phage scaffolding protein | - |
| A6J95_RS08905 () | 1905480..1905707 | - | 228 | WP_018112732.1 | hypothetical protein | - |
| A6J95_RS08910 () | 1905758..1906030 | - | 273 | WP_018112733.1 | hypothetical protein | - |
| A6J95_RS08915 () | 1906049..1906585 | - | 537 | WP_018112734.1 | hypothetical protein | - |
| A6J95_RS08920 () | 1906587..1906832 | - | 246 | WP_018112735.1 | hypothetical protein | - |
| A6J95_RS08925 () | 1906903..1907151 | - | 249 | WP_009888832.1 | hypothetical protein | - |
| A6J95_RS08930 () | 1907153..1908688 | - | 1536 | WP_018112736.1 | minor capsid protein | - |
| A6J95_RS08935 () | 1908678..1910072 | - | 1395 | WP_018112737.1 | phage portal protein | - |
| A6J95_RS08940 () | 1910077..1911306 | - | 1230 | WP_018112738.1 | PBSX family phage terminase large subunit | - |
| A6J95_RS08945 () | 1911299..1911985 | - | 687 | WP_018112739.1 | helix-turn-helix domain-containing protein | - |
| A6J95_RS20360 () | 1912052..1912219 | - | 168 | WP_018112740.1 | hypothetical protein | - |
| A6J95_RS08950 () | 1912363..1913040 | - | 678 | WP_018112741.1 | Bro-N domain-containing protein | - |
| A6J95_RS08955 () | 1913574..1914062 | - | 489 | WP_011861022.1 | hypothetical protein | - |
| A6J95_RS08960 () | 1914152..1915000 | - | 849 | WP_015994384.1 | ORF6C domain-containing protein | - |
| A6J95_RS08965 () | 1915102..1915509 | - | 408 | WP_018112742.1 | RusA family crossover junction endodeoxyribonuclease | - |
| A6J95_RS08970 () | 1915527..1915742 | - | 216 | WP_018112743.1 | DUF3850 domain-containing protein | - |
| A6J95_RS20365 () | 1915841..1916014 | - | 174 | WP_018112744.1 | hypothetical protein | - |
| A6J95_RS08975 () | 1916131..1916460 | - | 330 | WP_018112745.1 | hypothetical protein | - |
| A6J95_RS08980 () | 1916487..1916663 | - | 177 | WP_018112746.1 | hypothetical protein | - |
| A6J95_RS08985 () | 1916660..1917385 | - | 726 | WP_018112747.1 | phosphoadenosine phosphosulfate reductase family protein | - |
| A6J95_RS08990 () | 1917394..1918389 | - | 996 | WP_018112748.1 | nucleoid-associated protein | - |
| A6J95_RS08995 () | 1918386..1918607 | - | 222 | WP_018112749.1 | hypothetical protein | - |
| A6J95_RS09000 () | 1918702..1918950 | - | 249 | WP_018112750.1 | hypothetical protein | - |
| A6J95_RS20370 () | 1918950..1919123 | - | 174 | WP_018112751.1 | hypothetical protein | - |
| A6J95_RS20375 () | 1919116..1919274 | - | 159 | WP_018112752.1 | hypothetical protein | - |
| A6J95_RS09010 () | 1919377..1919826 | - | 450 | WP_018112754.1 | hypothetical protein | - |
| A6J95_RS09015 () | 1919813..1919962 | - | 150 | WP_018112755.1 | hypothetical protein | - |
| A6J95_RS09020 () | 1919931..1920314 | - | 384 | WP_018112756.1 | hypothetical protein | - |
| A6J95_RS09025 () | 1920331..1920582 | - | 252 | WP_009901719.1 | hypothetical protein | - |
| A6J95_RS09030 () | 1920569..1920979 | - | 411 | WP_009901718.1 | hypothetical protein | - |
| A6J95_RS09035 () | 1921054..1921461 | - | 408 | WP_009901717.1 | single-stranded DNA-binding protein | - |
| A6J95_RS09040 () | 1921479..1921652 | - | 174 | WP_009901716.1 | hypothetical protein | - |
| A6J95_RS09045 () | 1921713..1922594 | - | 882 | WP_009901715.1 | DnaD domain protein | - |
| A6J95_RS09050 () | 1922604..1923212 | - | 609 | WP_009901714.1 | ERF family protein | - |
| A6J95_RS09055 () | 1923222..1923731 | - | 510 | WP_009901713.1 | siphovirus Gp157 family protein | - |
| A6J95_RS09060 () | 1923814..1924131 | - | 318 | WP_009901712.1 | hypothetical protein | - |
| A6J95_RS09065 () | 1924144..1924371 | - | 228 | WP_009901711.1 | hypothetical protein | - |
| A6J95_RS09070 () | 1924473..1924697 | - | 225 | WP_009901709.1 | DeoR family transcriptional regulator | - |
| A6J95_RS09075 () | 1924733..1924987 | - | 255 | WP_009901708.1 | hypothetical protein | - |
| A6J95_RS09080 () | 1925023..1925811 | - | 789 | WP_009901707.1 | phage antirepressor Ant | - |
| A6J95_RS09085 () | 1925804..1925983 | - | 180 | WP_009901706.1 | hypothetical protein | - |
| A6J95_RS09090 () | 1926119..1926298 | + | 180 | WP_009901705.1 | Arc family DNA-binding protein | - |
| A6J95_RS09095 () | 1926595..1926798 | - | 204 | WP_009901703.1 | putative HTH-type transcriptional regulator | VF |
| A6J95_RS09100 () | 1926982..1927347 | + | 366 | WP_009901702.1 | helix-turn-helix domain-containing protein | - |
| A6J95_RS20380 () | 1927363..1927503 | - | 141 | WP_009901701.1 | hypothetical protein | - |
| A6J95_RS09105 () | 1927836..1928051 | + | 216 | WP_009901700.1 | helix-turn-helix domain-containing protein | - |
| A6J95_RS09110 () | 1928128..1929174 | + | 1047 | WP_025985731.1 | Putative prophage phiRv2 integrase ; Integrase | Integrase |
| A6J95_RS09115 () | 1929251..1930786 | - | 1536 | WP_003425341.1 | glutamine-hydrolyzing GMP synthase | - |
| A6J95_RS09120 () | 1931168..1931587 | - | 420 | WP_016729228.1 | DUF111 family protein | - |
| A6J95_RS09125 () | 1931617..1932351 | - | 735 | WP_009895287.1 | nickel pincer cofactor biosynthesis protein LarC | - |
| A6J95_RS09130 () | 1932435..1933175 | - | 741 | WP_009895285.1 | nickel pincer cofactor biosynthesis protein LarB | - |
| A6J95_RS09135 () | 1933437..1935065 | - | 1629 | WP_003435012.1 | 60 kDa chaperonin | VF |
| A6J95_RS09140 () | 1935098..1935382 | - | 285 | WP_003420907.1 | co-chaperone GroES | - |
| A6J95_RS09145 () | 1935575..1937065 | - | 1491 | WP_009888027.1 | cardiolipin synthase | - |
| A6J95_RS09150 () | 1937083..1937958 | - | 876 | WP_009895282.1 | 8-oxoguanine DNA glycosylase | - |
| A6J95_RS09155 () | 1938252..1939283 | - | 1032 | WP_003425354.1 | putative sulfate exporter family transporter | - |
| A6J95_RS09160 () | 1939471..1940361 | + | 891 | WP_003435002.1 | LysR family transcriptional regulator | - |
| A6J95_RS09165 () | 1940413..1941339 | - | 927 | WP_009895279.1 | 2-dehydropantoate 2-reductase | - |
| A6J95_RS09170 () | 1941554..1942138 | - | 585 | WP_003420885.1 | orotate phosphoribosyltransferase | - |
| A6J95_RS09175 () | 1942223..1943125 | - | 903 | WP_003434510.1 | dihydroorotate dehydrogenase | - |
| A6J95_RS09180 () | 1943118..1943810 | - | 693 | WP_003434506.1 | dihydroorotate dehydrogenase electron transfer subunit | - |
| A6J95_RS09185 () | 1943849..1944769 | - | 921 | WP_003434504.1 | aspartate carbamoyltransferase | - |
Similar MGE(s)
Similar MGE(s) is defined as other TA-related MGE(s) with Mash distance < 0.01 to this MGE.
| Detail | Organism | MGE type | Related TA | Genome accession | Coordinates | Mash distance |
|---|