MGE detailed information
MGE type: Prophage MGE length: 66438 bp
Accession: NC_017178 Location: 1666842..1733279 Organism: Clostridium difficile 2007855 Replicon: chromosome
Accession: NC_017178 Location: 1666842..1733279 Organism: Clostridium difficile 2007855 Replicon: chromosome
Gene structure
The 5 kb flanking regions of this MGE are displayed.
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| CD7855_RS07685 () | 1661947..1662708 | + | 762 | WP_009889424.1 | M48 family metallopeptidase | - |
| CD7855_RS07690 () | 1663239..1663478 | + | 240 | WP_003429800.1 | ACT domain-containing protein | - |
| CD7855_RS07695 () | 1663748..1664743 | + | 996 | WP_012816147.1 | ketol-acid reductoisomerase | - |
| CD7855_RS07700 () | 1664796..1666484 | + | 1689 | WP_009888799.1 | biosynthetic-type acetolactate synthase large subunit | - |
| CD7855_RS07705 () | 1666842..1667972 | - | 1131 | WP_003429803.1 | Putative prophage phiRv2 integrase ; Integrase | Integrase |
| CD7855_RS07710 () | 1668051..1668758 | - | 708 | WP_009888800.1 | HIRAN domain-containing protein | - |
| CD7855_RS07715 () | 1668771..1669640 | - | 870 | WP_009888801.1 | HipA domain-containing protein | - |
| CD7855_RS07720 () | 1670260..1670766 | - | 507 | WP_003429804.1 | ImmA/IrrE family metallo-endopeptidase | - |
| CD7855_RS07725 () | 1670842..1671390 | - | 549 | WP_009893126.1 | helix-turn-helix domain-containing protein | - |
| CD7855_RS07730 () | 1671402..1671743 | - | 342 | WP_009888806.1 | XRE family transcriptional regulator | - |
| CD7855_RS07735 () | 1671921..1672124 | + | 204 | WP_009893129.1 | helix-turn-helix domain-containing protein | - |
| CD7855_RS07740 () | 1672172..1672981 | + | 810 | WP_009888810.1 | phage antirepressor | - |
| CD7855_RS07745 () | 1673028..1673237 | + | 210 | WP_009888812.1 | hypothetical protein | - |
| CD7855_RS07750 () | 1673247..1673621 | - | 375 | WP_003433505.1 | hypothetical protein | - |
| CD7855_RS07755 () | 1673697..1673894 | + | 198 | WP_009888813.1 | helix-turn-helix transcriptional regulator | - |
| CD7855_RS07760 () | 1673925..1674317 | + | 393 | WP_009888815.1 | helix-turn-helix domain-containing protein | - |
| CD7855_RS07765 () | 1674298..1674447 | + | 150 | WP_003429817.1 | hypothetical protein | - |
| CD7855_RS07770 () | 1674518..1674955 | + | 438 | WP_003433513.1 | hypothetical protein | - |
| CD7855_RS07775 () | 1674967..1676133 | + | 1167 | WP_009888818.1 | DUF2800 domain-containing protein | - |
| CD7855_RS07780 () | 1676148..1676483 | + | 336 | WP_009888819.1 | hypothetical protein | - |
| CD7855_RS07785 () | 1676536..1677108 | + | 573 | WP_003429822.1 | DNA-directed RNA polymerase sigma-70 factor | - |
| CD7855_RS07790 () | 1677131..1677703 | + | 573 | WP_003433516.1 | DUF2815 family protein | - |
| CD7855_RS07795 () | 1677703..1679661 | + | 1959 | WP_009888821.1 | DNA polymerase | - |
| CD7855_RS07800 () | 1679673..1682090 | + | 2418 | WP_009888822.1 | virulence-associated E family protein | - |
| CD7855_RS07805 () | 1682372..1682698 | + | 327 | WP_003433522.1 | VRR-NUC domain-containing protein | - |
| CD7855_RS07810 () | 1682647..1684017 | + | 1371 | WP_009888823.1 | DEAD/DEAH box helicase | - |
| CD7855_RS07815 () | 1684041..1684178 | + | 138 | WP_009888824.1 | hypothetical protein | - |
| CD7855_RS07820 () | 1684171..1684650 | + | 480 | WP_009888825.1 | sigma-70 region 4 domain-containing protein | - |
| CD7855_RS07825 () | 1684933..1685482 | + | 550 | Protein_1483 | Bro-N domain-containing protein | - |
| CD7855_RS07830 () | 1685677..1686651 | + | 975 | WP_009888827.1 | hypothetical protein | - |
| CD7855_RS07835 () | 1686672..1687181 | + | 510 | WP_003429834.1 | hypothetical protein | - |
| CD7855_RS07840 () | 1687251..1687943 | + | 693 | WP_009888829.1 | helix-turn-helix domain-containing protein | - |
| CD7855_RS07845 () | 1687921..1689174 | + | 1254 | WP_012816148.1 | PBSX family phage terminase large subunit | - |
| CD7855_RS07850 () | 1689180..1690622 | + | 1443 | WP_009888831.1 | phage portal protein | - |
| CD7855_RS07855 () | 1690612..1692147 | + | 1536 | WP_009893134.1 | minor capsid protein | - |
| CD7855_RS07860 () | 1692149..1692397 | + | 249 | WP_009888832.1 | hypothetical protein | - |
| CD7855_RS07865 () | 1692465..1693028 | + | 564 | WP_009888833.1 | phage scaffolding protein | - |
| CD7855_RS07870 () | 1693040..1693930 | + | 891 | WP_009888834.1 | hypothetical protein | - |
| CD7855_RS07875 () | 1693949..1694182 | + | 234 | WP_009888835.1 | hypothetical protein | - |
| CD7855_RS07880 () | 1694192..1694593 | + | 402 | WP_009888836.1 | hypothetical protein | - |
| CD7855_RS07885 () | 1694587..1694934 | + | 348 | WP_003433540.1 | hypothetical protein | - |
| CD7855_RS07890 () | 1694934..1695224 | + | 291 | WP_009893135.1 | HK97 gp10 family phage protein | - |
| CD7855_RS07895 () | 1695334..1696140 | + | 807 | WP_009888838.1 | hypothetical protein | - |
| CD7855_RS07900 () | 1696489..1696926 | + | 438 | WP_009888839.1 | hypothetical protein | - |
| CD7855_RS07905 () | 1696919..1697095 | + | 177 | WP_009888840.1 | hypothetical protein | - |
| CD7855_RS07910 () | 1697096..1698406 | + | 1311 | WP_009893136.1 | phage tail sheath family protein | - |
| CD7855_RS07915 () | 1698423..1698893 | + | 471 | WP_009888842.1 | phage tail tube protein | - |
| CD7855_RS07920 () | 1698952..1699779 | + | 828 | WP_009888843.1 | hypothetical protein | - |
| CD7855_RS07925 () | 1699851..1700291 | + | 441 | WP_003429853.1 | phage portal protein | - |
| CD7855_RS07930 () | 1700632..1700793 | + | 162 | WP_003429855.1 | hypothetical protein | Toxin Detail |
| - () | 1700713..1700852 | - | 140 | NuclAT_1 | - | Antitoxin Detail |
| - () | 1700713..1700852 | - | 140 | NuclAT_2 | - | Antitoxin Detail |
| - () | 1701197..1701245 | - | 49 | NuclAT_4 | - | - |
| - () | 1701197..1701245 | - | 49 | NuclAT_5 | - | - |
| CD7855_RS07935 () | 1702130..1702318 | + | 189 | WP_003429858.1 | hypothetical protein | - |
| CD7855_RS07940 () | 1702436..1703302 | + | 867 | WP_009888845.1 | hypothetical protein | - |
| CD7855_RS07945 () | 1704167..1704694 | + | 528 | WP_009888847.1 | DUF4352 domain-containing protein | - |
| CD7855_RS07950 () | 1704832..1705599 | + | 768 | WP_009888848.1 | DUF4428 domain-containing protein | - |
| CD7855_RS07955 () | 1705665..1708037 | + | 2373 | WP_009893138.1 | tape measure protein | - |
| CD7855_RS07960 () | 1708054..1708743 | + | 690 | WP_009888849.1 | LysM peptidoglycan-binding domain-containing protein | - |
| CD7855_RS07965 () | 1708736..1710628 | + | 1893 | WP_009893140.1 | Gamma-D-glutamyl-L-lysine dipeptidyl-peptidase | VF |
| CD7855_RS07970 () | 1710642..1710902 | + | 261 | WP_009893142.1 | DUF2577 domain-containing protein | - |
| CD7855_RS07975 () | 1710907..1711326 | + | 420 | WP_009888851.1 | DUF2634 domain-containing protein | - |
| CD7855_RS07980 () | 1711327..1712376 | + | 1050 | WP_009888852.1 | baseplate J/gp47 family protein | - |
| CD7855_RS07985 () | 1712369..1712986 | + | 618 | WP_003433579.1 | YmfQ family protein | - |
| CD7855_RS07990 () | 1712998..1714023 | + | 1026 | WP_009888853.1 | phage tail protein | - |
| CD7855_RS07995 () | 1714040..1715566 | + | 1527 | WP_009893144.1 | hypothetical protein | - |
| CD7855_RS08000 () | 1715581..1715874 | + | 294 | WP_009889429.1 | hypothetical protein | - |
| CD7855_RS08005 () | 1715874..1716056 | + | 183 | WP_009889431.1 | hypothetical protein | - |
| CD7855_RS08010 () | 1716090..1716656 | + | 567 | WP_009889434.1 | hypothetical protein | - |
| CD7855_RS08015 () | 1716687..1716977 | + | 291 | WP_009889435.1 | hypothetical protein | - |
| CD7855_RS08020 () | 1716981..1717238 | + | 258 | WP_009889440.1 | phage holin family protein | - |
| CD7855_RS08025 () | 1717499..1718362 | + | 864 | WP_003429958.1 | Abi family protein | - |
| CD7855_RS08030 () | 1718441..1719253 | + | 813 | WP_009889444.1 | N-acetylmuramoyl-L-alanine amidase | - |
| CD7855_RS08035 () | 1719347..1721746 | + | 2400 | WP_009893147.1 | N-acetylmuramoyl-L-alanine amidase LytC | VF |
| CD7855_RS08040 () | 1721787..1721972 | - | 186 | WP_003433687.1 | hypothetical protein | - |
| CD7855_RS08045 () | 1722667..1723344 | + | 678 | WP_009889448.1 | manganese catalase family protein | - |
| CD7855_RS08050 () | 1723518..1725554 | + | 2037 | WP_009889450.1 | thioredoxin domain-containing protein | - |
| CD7855_RS08055 () | 1725745..1726311 | - | 567 | WP_009889452.1 | MarR family transcriptional regulator | - |
| CD7855_RS08060 () | 1726595..1727122 | + | 528 | Protein_1530 | alpha/beta fold hydrolase | - |
| CD7855_RS08065 () | 1727754..1727861 | + | 108 | WP_009889455.1 | transposase | - |
| CD7855_RS08070 () | 1727863..1728980 | + | 1118 | Protein_1532 | IS200-IS605 family transposase ISBth17 | Transposase |
| CD7855_RS08075 () | 1729045..1729506 | + | 462 | WP_009889460.1 | alpha/beta hydrolase | - |
| CD7855_RS08080 () | 1729971..1731185 | + | 1215 | WP_009893153.1 | ISNCY family transposase ISH7A | Transposase |
| CD7855_RS08085 () | 1731605..1732126 | - | 522 | WP_009889468.1 | GNAT family N-acetyltransferase | - |
| CD7855_RS08090 () | 1732482..1733279 | + | 798 | WP_003436560.1 | 3D domain-containing protein | - |
| CD7855_RS08095 () | 1733389..1733979 | + | 591 | WP_009893156.1 | SGNH/GDSL hydrolase family protein | - |
| CD7855_RS08100 () | 1734045..1735742 | + | 1698 | WP_009893157.1 | phospho-sugar mutase | - |
| CD7855_RS08105 () | 1735956..1736795 | + | 840 | WP_003436555.1 | YihY/virulence factor BrkB family protein | - |
Similar MGE(s)
Similar MGE(s) is defined as other TA-related MGE(s) with Mash distance < 0.01 to this MGE.
| Detail | Organism | MGE type | Related TA | Genome accession | Coordinates | Mash distance |
|---|---|---|---|---|---|---|
| Clostridium difficile R20291 | Prophage | TA24266 | NC_013316 | 1671047..1738184 | 0 |