MGE detailed information
MGE type: Prophage MGE length: 54725 bp
Accession: NZ_CP019860 Location: 3648963..3703687 Organism: Clostridioides difficile strain DSM 29632 Replicon: chromosome
Accession: NZ_CP019860 Location: 3648963..3703687 Organism: Clostridioides difficile strain DSM 29632 Replicon: chromosome
Gene structure
The 5 kb flanking regions of this MGE are displayed.
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| CDIF29632_RS16800 () | 3644857..3645684 | - | 828 | WP_003432345.1 | polysaccharide deacetylase family protein | - |
| CDIF29632_RS16805 () | 3645732..3647168 | - | 1437 | WP_009891715.1 | iron hydrogenase | - |
| CDIF29632_RS16810 () | 3647255..3648124 | - | 870 | WP_009898391.1 | FUSC family protein | - |
| CDIF29632_RS16815 () | 3648282..3648935 | - | 654 | WP_003432348.1 | phosphate signaling complex protein PhoU | - |
| CDIF29632_RS16820 () | 3648963..3649727 | - | 765 | WP_070538034.1 | phosphate ABC transporter ATP-binding protein | - |
| CDIF29632_RS16825 () | 3649746..3650570 | - | 825 | WP_003432350.1 | Phosphate transport system permease protein PstA | VF |
| CDIF29632_RS16830 () | 3650572..3651489 | - | 918 | WP_021361136.1 | Phosphate transport system permease protein PstC 2 | VF |
| CDIF29632_RS16835 () | 3651870..3652316 | - | 447 | WP_167652391.1 | hypothetical protein | - |
| CDIF29632_RS16840 () | 3653039..3653425 | - | 387 | WP_021366416.1 | BlaI/MecI/CopY family transcriptional regulator | - |
| CDIF29632_RS16845 () | 3653465..3653746 | - | 282 | WP_070538156.1 | BlaI/MecI/CopY family transcriptional regulator | - |
| CDIF29632_RS16850 () | 3654214..3654390 | + | 177 | WP_021358767.1 | hypothetical protein | - |
| - () | 3654523..3654669 | + | 147 | NuclAT_0 | - | Antitoxin Detail |
| - () | 3654523..3654673 | + | 151 | NuclAT_1 | - | - |
| CDIF29632_RS16855 () | 3654595..3654738 | - | 144 | WP_011861731.1 | hypothetical protein | Toxin Detail |
| CDIF29632_RS16860 () | 3654996..3655184 | + | 189 | WP_021360368.1 | hypothetical protein | - |
| CDIF29632_RS16865 () | 3655779..3656807 | - | 1029 | WP_032544344.1 | hypothetical protein | - |
| CDIF29632_RS16870 () | 3657220..3658041 | - | 822 | WP_077770701.1 | N-acetylmuramoyl-L-alanine amidase | - |
| CDIF29632_RS16875 () | 3658041..3658532 | - | 492 | WP_077770700.1 | phage holin family protein | - |
| CDIF29632_RS16880 () | 3658540..3658758 | - | 219 | WP_009894435.1 | hypothetical protein | - |
| CDIF29632_RS16885 () | 3658858..3659040 | - | 183 | WP_070537881.1 | hypothetical protein | - |
| CDIF29632_RS16890 () | 3659040..3659336 | - | 297 | WP_070537883.1 | hypothetical protein | - |
| CDIF29632_RS16895 () | 3659709..3660968 | - | 1260 | Protein_3178 | hypothetical protein | - |
| CDIF29632_RS16900 () | 3660985..3661956 | - | 972 | WP_074049827.1 | phage tail protein | - |
| CDIF29632_RS16905 () | 3661968..3662585 | - | 618 | WP_070538477.1 | YmfQ family protein | - |
| CDIF29632_RS16910 () | 3662578..3663627 | - | 1050 | WP_074441048.1 | baseplate J/gp47 family protein | - |
| CDIF29632_RS16915 () | 3663628..3664047 | - | 420 | WP_003433575.1 | DUF2634 domain-containing protein | - |
| CDIF29632_RS16920 () | 3664052..3664312 | - | 261 | WP_003433573.1 | DUF2577 domain-containing protein | - |
| CDIF29632_RS16925 () | 3664326..3666293 | - | 1968 | WP_074176385.1 | Murein DD-endopeptidase MepH | VF |
| CDIF29632_RS16930 () | 3666286..3666981 | - | 696 | WP_070538026.1 | LysM peptidoglycan-binding domain-containing protein | - |
| CDIF29632_RS16935 () | 3666997..3669291 | - | 2295 | WP_070538028.1 | tape measure protein | - |
| CDIF29632_RS16940 () | 3669356..3670138 | - | 783 | WP_070538030.1 | SHOCT domain-containing protein | - |
| CDIF29632_RS19500 () | 3670260..3670427 | - | 168 | WP_021374752.1 | hypothetical protein | - |
| CDIF29632_RS16945 () | 3670482..3671324 | - | 843 | WP_118695669.1 | phage repressor protein | - |
| CDIF29632_RS16950 () | 3671451..3671621 | - | 171 | WP_021361718.1 | ribbon-helix-helix domain-containing protein | - |
| CDIF29632_RS16955 () | 3672077..3672235 | - | 159 | WP_021369367.1 | hypothetical protein | - |
| CDIF29632_RS16960 () | 3672364..3672558 | - | 195 | WP_074074732.1 | hypothetical protein | - |
| CDIF29632_RS16965 () | 3672558..3672998 | - | 441 | WP_015984847.1 | hypothetical protein | - |
| CDIF29632_RS16970 () | 3673000..3673257 | - | 258 | WP_021403169.1 | hypothetical protein | - |
| CDIF29632_RS16975 () | 3673310..3673786 | - | 477 | WP_032516644.1 | phage tail tube protein | - |
| CDIF29632_RS16980 () | 3673805..3675115 | - | 1311 | WP_077770699.1 | phage tail sheath family protein | - |
| CDIF29632_RS16985 () | 3675116..3675292 | - | 177 | WP_016728451.1 | hypothetical protein | - |
| CDIF29632_RS16990 () | 3675285..3675722 | - | 438 | WP_021366374.1 | hypothetical protein | - |
| CDIF29632_RS16995 () | 3675715..3676140 | - | 426 | WP_009896626.1 | HK97 gp10 family phage protein | - |
| CDIF29632_RS17000 () | 3676140..3676487 | - | 348 | WP_003429844.1 | hypothetical protein | - |
| CDIF29632_RS17005 () | 3676481..3676882 | - | 402 | WP_077726393.1 | hypothetical protein | - |
| CDIF29632_RS17010 () | 3676892..3677125 | - | 234 | WP_009896624.1 | hypothetical protein | - |
| CDIF29632_RS17015 () | 3677125..3678024 | - | 900 | WP_016728454.1 | hypothetical protein | - |
| CDIF29632_RS17020 () | 3678036..3678599 | - | 564 | WP_074081543.1 | phage scaffolding protein | - |
| CDIF29632_RS17025 () | 3678665..3678865 | - | 201 | WP_009896618.1 | hypothetical protein | - |
| CDIF29632_RS17030 () | 3678880..3680277 | - | 1398 | WP_021363489.1 | minor capsid protein | - |
| CDIF29632_RS17035 () | 3680267..3681697 | - | 1431 | WP_074082548.1 | phage portal protein | - |
| CDIF29632_RS17040 () | 3681712..3682965 | - | 1254 | WP_022620893.1 | PBSX family phage terminase large subunit | - |
| CDIF29632_RS17045 () | 3682943..3683626 | - | 684 | WP_077770698.1 | helix-turn-helix domain-containing protein | - |
| CDIF29632_RS17050 () | 3683761..3683967 | - | 207 | WP_021403031.1 | hypothetical protein | - |
| CDIF29632_RS17055 () | 3684431..3684913 | - | 483 | WP_070538312.1 | hypothetical protein | - |
| CDIF29632_RS17060 () | 3685025..3685762 | - | 738 | WP_070538314.1 | antA/AntB antirepressor family protein | - |
| CDIF29632_RS17065 () | 3685825..3686232 | - | 408 | WP_070538316.1 | RusA family crossover junction endodeoxyribonuclease | - |
| CDIF29632_RS17070 () | 3686222..3686620 | - | 399 | WP_070538318.1 | hypothetical protein | - |
| CDIF29632_RS17080 () | 3686774..3687004 | - | 231 | WP_070538322.1 | DUF3850 domain-containing protein | - |
| CDIF29632_RS17085 () | 3687085..3687393 | - | 309 | WP_070538324.1 | hypothetical protein | - |
| CDIF29632_RS17090 () | 3687405..3687593 | - | 189 | WP_070538326.1 | hypothetical protein | - |
| CDIF29632_RS17095 () | 3687596..3687967 | - | 372 | WP_070538328.1 | hypothetical protein | - |
| CDIF29632_RS17100 () | 3687951..3688127 | - | 177 | WP_070538331.1 | hypothetical protein | - |
| CDIF29632_RS17105 () | 3688147..3688437 | - | 291 | WP_070538333.1 | hypothetical protein | - |
| CDIF29632_RS17110 () | 3688448..3689443 | - | 996 | WP_070538334.1 | nucleoid-associated protein | - |
| CDIF29632_RS17115 () | 3689455..3689664 | - | 210 | WP_021401451.1 | hypothetical protein | - |
| CDIF29632_RS19505 () | 3689832..3689996 | - | 165 | WP_021402824.1 | hypothetical protein | - |
| CDIF29632_RS17120 () | 3690158..3690349 | - | 192 | WP_070538336.1 | hypothetical protein | - |
| CDIF29632_RS17125 () | 3690349..3690522 | - | 174 | WP_070538338.1 | DUF3797 domain-containing protein | - |
| CDIF29632_RS17130 () | 3690519..3690659 | - | 141 | WP_066024970.1 | hypothetical protein | - |
| CDIF29632_RS17135 () | 3690628..3690984 | - | 357 | WP_070538340.1 | hypothetical protein | - |
| CDIF29632_RS17140 () | 3691000..3691257 | - | 258 | WP_021369346.1 | hypothetical protein | - |
| CDIF29632_RS17145 () | 3691329..3691736 | - | 408 | WP_015981535.1 | single-stranded DNA-binding protein | - |
| CDIF29632_RS17150 () | 3691752..3691925 | - | 174 | WP_070538342.1 | resolvase | - |
| CDIF29632_RS17155 () | 3691983..3692912 | - | 930 | WP_070538344.1 | helix-turn-helix domain-containing protein | - |
| CDIF29632_RS17160 () | 3692927..3693760 | - | 834 | WP_009894690.1 | recombinase RecT | - |
| CDIF29632_RS17165 () | 3693773..3694663 | - | 891 | WP_102818051.1 | YqaJ viral recombinase family protein | - |
| CDIF29632_RS17170 () | 3694858..3695085 | - | 228 | WP_009894686.1 | hypothetical protein | - |
| CDIF29632_RS19510 () | 3695085..3695243 | - | 159 | WP_009894685.1 | hypothetical protein | - |
| CDIF29632_RS17175 () | 3695399..3695587 | + | 189 | WP_009894684.1 | Arc family DNA-binding protein | - |
| CDIF29632_RS17180 () | 3695565..3695705 | - | 141 | WP_009903686.1 | Arc family DNA-binding protein | - |
| CDIF29632_RS17185 () | 3695737..3695925 | - | 189 | WP_070538346.1 | hypothetical protein | - |
| CDIF29632_RS17190 () | 3696027..3696356 | - | 330 | WP_009894680.1 | helix-turn-helix domain-containing protein | - |
| CDIF29632_RS17195 () | 3696426..3697217 | - | 792 | WP_009894678.1 | ORF6N domain-containing protein | - |
| CDIF29632_RS17200 () | 3697210..3697446 | - | 237 | WP_009894676.1 | hypothetical protein | VF |
| CDIF29632_RS17205 () | 3697591..3697956 | + | 366 | WP_009894674.1 | helix-turn-helix domain-containing protein | - |
| CDIF29632_RS17210 () | 3698649..3699827 | + | 1179 | WP_021369837.1 | phosphoribosyltransferase | - |
| CDIF29632_RS17215 () | 3699873..3701039 | + | 1167 | WP_070538348.1 | DNA-processing protein DprA | - |
| CDIF29632_RS17220 () | 3701265..3701666 | + | 402 | WP_070538350.1 | type II toxin-antitoxin system HicB family antitoxin | - |
| CDIF29632_RS17225 () | 3701738..3702856 | + | 1119 | WP_074436252.1 | Putative prophage phiRv2 integrase ; Integrase | Integrase |
| CDIF29632_RS17230 () | 3703007..3703687 | - | 681 | WP_003432361.1 | response regulator transcription factor | - |
| CDIF29632_RS17235 () | 3703737..3705752 | - | 2016 | WP_042743969.1 | sensor histidine kinase | - |
| CDIF29632_RS17240 () | 3705824..3706501 | - | 678 | WP_003417201.1 | response regulator transcription factor | - |
| CDIF29632_RS17245 () | 3707397..3708239 | - | 843 | WP_004454000.1 | phosphate ABC transporter substrate-binding protein | - |
Similar MGE(s)
Similar MGE(s) is defined as other TA-related MGE(s) with Mash distance < 0.01 to this MGE.
| Detail | Organism | MGE type | Related TA | Genome accession | Coordinates | Mash distance |
|---|