MGE detailed information
MGE type: Prophage MGE length: 69242 bp
Accession: NZ_CP072118 Location: 2706954..2776195 Organism: Clostridioides difficile isolate MAR286 Replicon: chromosome
Accession: NZ_CP072118 Location: 2706954..2776195 Organism: Clostridioides difficile isolate MAR286 Replicon: chromosome
Gene structure
The 5 kb flanking regions of this MGE are displayed.
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| J6L80_RS12500 (J6L80_12500) | 2703438..2704277 | - | 840 | WP_003429990.1 | YihY/virulence factor BrkB family protein | - |
| J6L80_RS12505 (J6L80_12505) | 2704491..2706188 | - | 1698 | WP_021393310.1 | phospho-sugar mutase | - |
| J6L80_RS12510 (J6L80_12510) | 2706254..2706844 | - | 591 | WP_003429982.1 | SGNH/GDSL hydrolase family protein | - |
| J6L80_RS12515 (J6L80_12515) | 2706954..2707751 | - | 798 | WP_003429980.1 | 3D domain-containing protein | - |
| J6L80_RS12520 (J6L80_12520) | 2708107..2708628 | + | 522 | WP_021387871.1 | GNAT family N-acetyltransferase | - |
| J6L80_RS12525 (J6L80_12525) | 2709050..2710264 | - | 1215 | WP_003429978.1 | helix-turn-helix transcriptional regulator | - |
| J6L80_RS12530 (J6L80_12530) | 2710481..2712610 | - | 2130 | WP_003433668.1 | ABC transporter permease | - |
| J6L80_RS12535 (J6L80_12535) | 2712633..2713367 | - | 735 | WP_021387870.1 | ABC transporter ATP-binding protein | - |
| J6L80_RS12540 (J6L80_12540) | 2713748..2714686 | - | 939 | WP_003429975.1 | alpha/beta hydrolase | - |
| J6L80_RS12545 (J6L80_12545) | 2714973..2715539 | + | 567 | WP_003429973.1 | MarR family transcriptional regulator | - |
| J6L80_RS12550 (J6L80_12550) | 2715732..2717768 | - | 2037 | WP_003429971.1 | thioredoxin domain-containing protein | - |
| J6L80_RS12555 (J6L80_12555) | 2717942..2718619 | - | 678 | WP_003429969.1 | manganese catalase family protein | - |
| J6L80_RS19730 | 2718962..2719090 | + | 129 | WP_003433669.1 | hypothetical protein | - |
| J6L80_RS12560 (J6L80_12560) | 2719336..2719512 | + | 177 | WP_016728851.1 | hypothetical protein | - |
| J6L80_RS19735 | 2719673..2719801 | + | 129 | WP_003433683.1 | hypothetical protein | - |
| J6L80_RS12565 (J6L80_12565) | 2720030..2720215 | + | 186 | WP_003433687.1 | hypothetical protein | - |
| J6L80_RS19580 | 2720257..2721150 | - | 894 | Protein_2399 | cell wall-binding repeat-containing protein | - |
| J6L80_RS12575 (J6L80_12575) | 2722705..2723517 | - | 813 | WP_217598211.1 | N-acetylmuramoyl-L-alanine amidase | - |
| J6L80_RS12580 (J6L80_12580) | 2723517..2724024 | - | 508 | Protein_2401 | phage holin family protein | - |
| J6L80_RS12585 (J6L80_12585) | 2724011..2724148 | - | 138 | WP_077723454.1 | XkdX family protein | - |
| J6L80_RS12590 (J6L80_12590) | 2724149..2724448 | - | 300 | WP_077710271.1 | hypothetical protein | - |
| J6L80_RS12595 (J6L80_12595) | 2724445..2725677 | - | 1233 | WP_077723453.1 | hypothetical protein | - |
| J6L80_RS12600 (J6L80_12600) | 2725711..2725893 | - | 183 | WP_038810682.1 | hypothetical protein | - |
| J6L80_RS12605 (J6L80_12605) | 2725893..2726189 | - | 297 | WP_038810681.1 | hypothetical protein | - |
| J6L80_RS12610 (J6L80_12610) | 2726203..2727897 | - | 1695 | WP_038810680.1 | glycine rich domain-containing protein | - |
| J6L80_RS12615 (J6L80_12615) | 2727914..2728939 | - | 1026 | WP_077723452.1 | phage tail protein | - |
| J6L80_RS12620 (J6L80_12620) | 2728951..2729568 | - | 618 | WP_038810354.1 | YmfQ family protein | - |
| J6L80_RS12625 (J6L80_12625) | 2729561..2730610 | - | 1050 | WP_038810352.1 | baseplate J/gp47 family protein | - |
| J6L80_RS12630 (J6L80_12630) | 2730611..2731030 | - | 420 | WP_074436209.1 | DUF2634 domain-containing protein | - |
| J6L80_RS12635 (J6L80_12635) | 2731035..2731295 | - | 261 | WP_009896657.1 | DUF2577 domain-containing protein | - |
| J6L80_RS12640 (J6L80_12640) | 2731309..2733267 | - | 1959 | WP_217598212.1 | NlpC/P60 family protein | - |
| J6L80_RS12645 (J6L80_12645) | 2733260..2733949 | - | 690 | WP_038810365.1 | LysM peptidoglycan-binding domain-containing protein | - |
| J6L80_RS12650 (J6L80_12650) | 2733965..2736253 | - | 2289 | WP_038810364.1 | tape measure protein | - |
| J6L80_RS12655 (J6L80_12655) | 2736320..2737093 | - | 774 | WP_038810363.1 | SHOCT domain-containing protein | - |
| J6L80_RS12660 (J6L80_12660) | 2737652..2737810 | - | 159 | WP_021401161.1 | hypothetical protein | - |
| J6L80_RS19585 | 2737844..2738623 | - | 780 | WP_038810361.1 | ORF6N domain-containing protein | - |
| J6L80_RS12675 (J6L80_12675) | 2738867..2739070 | + | 204 | WP_021369176.1 | helix-turn-helix transcriptional regulator | - |
| J6L80_RS12680 (J6L80_12680) | 2740065..2740862 | - | 798 | WP_217598213.1 | ORF6N domain-containing protein | - |
| J6L80_RS12685 (J6L80_12685) | 2741140..2741352 | + | 213 | WP_021377386.1 | helix-turn-helix transcriptional regulator | - |
| - | 2743133..2743266 | + | 134 | - | - | Antitoxin Detail |
| J6L80_RS12690 (J6L80_12690) | 2743186..2743347 | - | 162 | WP_003429855.1 | hypothetical protein | Toxin Detail |
| J6L80_RS12695 (J6L80_12695) | 2743688..2744128 | - | 441 | WP_003429853.1 | phage portal protein | - |
| J6L80_RS12700 (J6L80_12700) | 2744200..2744670 | - | 471 | WP_003429851.1 | phage tail tube protein | - |
| J6L80_RS12705 (J6L80_12705) | 2744687..2745997 | - | 1311 | WP_070116964.1 | phage tail sheath family protein | - |
| J6L80_RS12710 (J6L80_12710) | 2745998..2746174 | - | 177 | WP_070112848.1 | hypothetical protein | - |
| J6L80_RS12715 (J6L80_12715) | 2746167..2746604 | - | 438 | WP_003433544.1 | hypothetical protein | - |
| J6L80_RS12720 (J6L80_12720) | 2746597..2747022 | - | 426 | WP_038812299.1 | HK97 gp10 family phage protein | - |
| J6L80_RS12725 (J6L80_12725) | 2747022..2747369 | - | 348 | WP_070113072.1 | hypothetical protein | - |
| J6L80_RS12730 (J6L80_12730) | 2747363..2747764 | - | 402 | WP_021363493.1 | hypothetical protein | - |
| J6L80_RS12735 (J6L80_12735) | 2747774..2748007 | - | 234 | WP_070113070.1 | hypothetical protein | - |
| J6L80_RS12740 (J6L80_12740) | 2748007..2748906 | - | 900 | WP_070116963.1 | capsid protein | - |
| J6L80_RS12745 (J6L80_12745) | 2748918..2749481 | - | 564 | WP_217598214.1 | phage scaffolding protein | - |
| J6L80_RS12750 (J6L80_12750) | 2749547..2749747 | - | 201 | WP_009896618.1 | hypothetical protein | - |
| J6L80_RS12755 (J6L80_12755) | 2749762..2751159 | - | 1398 | WP_217598215.1 | polymorphic toxin type 50 domain-containing protein | - |
| J6L80_RS12760 (J6L80_12760) | 2751149..2752588 | - | 1440 | WP_074081545.1 | phage portal protein | - |
| J6L80_RS12765 (J6L80_12765) | 2752594..2753835 | - | 1242 | WP_021402810.1 | PBSX family phage terminase large subunit | - |
| J6L80_RS12770 (J6L80_12770) | 2753825..2754517 | - | 693 | WP_003433528.1 | phage terminase small subunit | - |
| J6L80_RS12775 (J6L80_12775) | 2754588..2755097 | - | 510 | WP_003429834.1 | hypothetical protein | - |
| J6L80_RS12780 (J6L80_12780) | 2755118..2756092 | - | 975 | WP_003429833.1 | hypothetical protein | - |
| J6L80_RS12785 (J6L80_12785) | 2756395..2756583 | - | 189 | WP_235698854.1 | hypothetical protein | - |
| J6L80_RS12790 (J6L80_12790) | 2757106..2757585 | - | 480 | WP_003429831.1 | helix-turn-helix domain-containing protein | - |
| J6L80_RS12795 (J6L80_12795) | 2757578..2757715 | - | 138 | WP_003429830.1 | hypothetical protein | - |
| J6L80_RS12800 (J6L80_12800) | 2757739..2759109 | - | 1371 | WP_032518703.1 | DEAD/DEAH box helicase | - |
| J6L80_RS12805 (J6L80_12805) | 2759058..2759384 | - | 327 | WP_003433522.1 | VRR-NUC domain-containing protein | - |
| J6L80_RS12810 (J6L80_12810) | 2759676..2762093 | - | 2418 | WP_021359007.1 | virulence-associated E family protein | - |
| J6L80_RS12815 (J6L80_12815) | 2762105..2764063 | - | 1959 | WP_217598216.1 | DNA polymerase | - |
| J6L80_RS12820 (J6L80_12820) | 2764063..2764635 | - | 573 | WP_003433516.1 | DUF2815 family protein | - |
| J6L80_RS12825 (J6L80_12825) | 2764658..2765230 | - | 573 | WP_003429822.1 | sigma factor | - |
| J6L80_RS12830 (J6L80_12830) | 2765283..2765618 | - | 336 | WP_038810636.1 | hypothetical protein | - |
| J6L80_RS12835 (J6L80_12835) | 2765634..2766800 | - | 1167 | WP_038810635.1 | DUF2800 domain-containing protein | - |
| J6L80_RS12840 (J6L80_12840) | 2766812..2767249 | - | 438 | WP_003433513.1 | hypothetical protein | - |
| J6L80_RS12845 (J6L80_12845) | 2767320..2767469 | - | 150 | WP_003429817.1 | hypothetical protein | - |
| J6L80_RS12850 (J6L80_12850) | 2767450..2767842 | - | 393 | WP_038810634.1 | helix-turn-helix domain-containing protein | - |
| J6L80_RS12855 (J6L80_12855) | 2767873..2768070 | - | 198 | WP_003433507.1 | helix-turn-helix transcriptional regulator | - |
| J6L80_RS12860 (J6L80_12860) | 2768146..2768520 | + | 375 | WP_003433505.1 | DUF6173 family protein | - |
| J6L80_RS12865 (J6L80_12865) | 2768530..2768739 | - | 210 | WP_009888812.1 | hypothetical protein | - |
| J6L80_RS12870 (J6L80_12870) | 2768786..2769589 | - | 804 | WP_038810633.1 | phage antirepressor KilAC domain-containing protein | - |
| J6L80_RS12875 (J6L80_12875) | 2769592..2769762 | - | 171 | WP_009902584.1 | hypothetical protein | - |
| J6L80_RS12880 (J6L80_12880) | 2769884..2770195 | + | 312 | WP_009902581.1 | hypothetical protein | - |
| J6L80_RS12885 (J6L80_12885) | 2770181..2770318 | - | 138 | WP_009902579.1 | hypothetical protein | - |
| J6L80_RS12890 (J6L80_12890) | 2770395..2770574 | + | 180 | WP_003429811.1 | Arc family DNA-binding protein | - |
| J6L80_RS19740 | 2770576..2770704 | - | 129 | WP_003429810.1 | hypothetical protein | - |
| J6L80_RS12895 (J6L80_12895) | 2770779..2771012 | - | 234 | WP_021396857.1 | helix-turn-helix transcriptional regulator | - |
| J6L80_RS19590 | 2771155..2771766 | + | 612 | WP_077726186.1 | helix-turn-helix transcriptional regulator | - |
| J6L80_RS12910 (J6L80_12910) | 2771778..2772326 | + | 549 | WP_085051465.1 | helix-turn-helix transcriptional regulator | - |
| J6L80_RS12915 (J6L80_12915) | 2772403..2772909 | + | 507 | WP_038810632.1 | ImmA/IrrE family metallo-endopeptidase | - |
| J6L80_RS12920 (J6L80_12920) | 2773397..2774266 | + | 870 | WP_085051464.1 | HipA domain-containing protein | - |
| J6L80_RS12925 (J6L80_12925) | 2774279..2774986 | + | 708 | WP_038810631.1 | HIRAN domain-containing protein | - |
| J6L80_RS12930 (J6L80_12930) | 2775065..2776195 | + | 1131 | WP_038810630.1 | site-specific integrase | - |
| J6L80_RS12935 (J6L80_12935) | 2776553..2778241 | - | 1689 | WP_003429802.1 | biosynthetic-type acetolactate synthase large subunit | - |
| J6L80_RS12940 (J6L80_12940) | 2778294..2779340 | - | 1047 | WP_256008780.1 | ketol-acid reductoisomerase | - |
| J6L80_RS12945 (J6L80_12945) | 2779593..2779832 | - | 240 | WP_003429800.1 | ACT domain-containing protein | - |
| J6L80_RS12950 (J6L80_12950) | 2780362..2781123 | - | 762 | WP_003429799.1 | SprT family zinc-dependent metalloprotease | - |
Similar MGE(s)
Similar MGE(s) is defined as other TA-related MGE(s) with Mash distance < 0.01 to this MGE.
| Detail | Organism | MGE type | Related TA | Genome accession | Coordinates | Mash distance |
|---|