MGE detailed information
MGE type: Prophage MGE length: 67137 bp
Accession: NZ_CP026597 Location: 1684653..1751789 Organism: Clostridioides difficile strain 10-00078 Replicon: chromosome
Accession: NZ_CP026597 Location: 1684653..1751789 Organism: Clostridioides difficile strain 10-00078 Replicon: chromosome
Gene structure
The 5 kb flanking regions of this MGE are displayed.
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| C3351_RS08105 () | 1679758..1680519 | + | 762 | WP_009889424.1 | M48 family metallopeptidase | - |
| C3351_RS08110 () | 1681050..1681289 | + | 240 | WP_003429800.1 | ACT domain-containing protein | - |
| C3351_RS08115 () | 1681559..1682554 | + | 996 | WP_012816147.1 | ketol-acid reductoisomerase | - |
| C3351_RS08120 () | 1682607..1684295 | + | 1689 | WP_009888799.1 | biosynthetic-type acetolactate synthase large subunit | - |
| C3351_RS08125 () | 1684653..1685783 | - | 1131 | WP_003429803.1 | site-specific integrase | - |
| C3351_RS08130 () | 1685862..1686569 | - | 708 | WP_009888800.1 | HIRAN domain-containing protein | - |
| C3351_RS08135 () | 1686582..1687451 | - | 870 | WP_009888801.1 | HipA domain-containing protein | - |
| C3351_RS08140 () | 1688071..1688577 | - | 507 | WP_003429804.1 | ImmA/IrrE family metallo-endopeptidase | - |
| C3351_RS08145 () | 1688653..1689201 | - | 549 | WP_009893126.1 | helix-turn-helix domain-containing protein | - |
| C3351_RS08150 () | 1689213..1689554 | - | 342 | WP_009888806.1 | XRE family transcriptional regulator | - |
| C3351_RS08155 () | 1689731..1689934 | + | 204 | WP_009893129.1 | helix-turn-helix domain-containing protein | - |
| C3351_RS08160 () | 1689982..1690791 | + | 810 | WP_009888810.1 | phage antirepressor | - |
| C3351_RS08165 () | 1690838..1691047 | + | 210 | WP_009888812.1 | hypothetical protein | - |
| C3351_RS08170 () | 1691057..1691431 | - | 375 | WP_003433505.1 | hypothetical protein | - |
| C3351_RS08175 () | 1691507..1691704 | + | 198 | WP_009888813.1 | helix-turn-helix transcriptional regulator | - |
| C3351_RS08180 () | 1691735..1692127 | + | 393 | WP_009888815.1 | helix-turn-helix domain-containing protein | - |
| C3351_RS19250 () | 1692108..1692257 | + | 150 | WP_003429817.1 | hypothetical protein | - |
| C3351_RS08185 () | 1692328..1692765 | + | 438 | WP_003433513.1 | hypothetical protein | - |
| C3351_RS08190 () | 1692777..1693943 | + | 1167 | WP_009888818.1 | DUF2800 domain-containing protein | - |
| C3351_RS08195 () | 1693958..1694293 | + | 336 | WP_009888819.1 | hypothetical protein | - |
| C3351_RS08200 () | 1694346..1694918 | + | 573 | WP_003429822.1 | DNA-directed RNA polymerase sigma-70 factor | - |
| C3351_RS08205 () | 1694941..1695513 | + | 573 | WP_003433516.1 | DUF2815 family protein | - |
| C3351_RS08210 () | 1695513..1697471 | + | 1959 | WP_009888821.1 | DNA polymerase | - |
| C3351_RS08215 () | 1697483..1699900 | + | 2418 | WP_009888822.1 | virulence-associated E family protein | - |
| C3351_RS08220 () | 1700182..1700508 | + | 327 | WP_003433522.1 | VRR-NUC domain-containing protein | - |
| C3351_RS08225 () | 1700457..1701827 | + | 1371 | WP_009888823.1 | DEAD/DEAH box helicase | - |
| C3351_RS19365 () | 1701851..1701988 | + | 138 | WP_009888824.1 | hypothetical protein | - |
| C3351_RS08230 () | 1701981..1702460 | + | 480 | WP_009888825.1 | sigma-70 region 4 domain-containing protein | - |
| C3351_RS08235 () | 1702743..1703292 | + | 550 | Protein_1487 | Bro-N domain-containing protein | - |
| C3351_RS08240 () | 1703487..1704461 | + | 975 | WP_009888827.1 | hypothetical protein | - |
| C3351_RS19255 () | 1704482..1704991 | + | 510 | WP_003429834.1 | hypothetical protein | - |
| C3351_RS08255 () | 1705061..1705753 | + | 693 | WP_009888829.1 | helix-turn-helix domain-containing protein | - |
| C3351_RS08260 () | 1705731..1706984 | + | 1254 | WP_012816148.1 | PBSX family phage terminase large subunit | - |
| C3351_RS08265 () | 1706990..1708432 | + | 1443 | WP_009888831.1 | phage portal protein | - |
| C3351_RS08270 () | 1708422..1709957 | + | 1536 | WP_009893134.1 | minor capsid protein | - |
| C3351_RS08275 () | 1709959..1710207 | + | 249 | WP_009888832.1 | hypothetical protein | - |
| C3351_RS08280 () | 1710275..1710838 | + | 564 | WP_009888833.1 | phage scaffolding protein | - |
| C3351_RS08285 () | 1710850..1711740 | + | 891 | WP_009888834.1 | hypothetical protein | - |
| C3351_RS08290 () | 1711759..1711992 | + | 234 | WP_009888835.1 | hypothetical protein | - |
| C3351_RS08295 () | 1712002..1712403 | + | 402 | WP_009888836.1 | hypothetical protein | - |
| C3351_RS08300 () | 1712397..1712744 | + | 348 | WP_003433540.1 | hypothetical protein | - |
| C3351_RS08305 () | 1712744..1713034 | + | 291 | WP_009893135.1 | HK97 gp10 family phage protein | - |
| C3351_RS08310 () | 1713144..1713950 | + | 807 | WP_009888838.1 | hypothetical protein | - |
| C3351_RS08315 () | 1714299..1714736 | + | 438 | WP_009888839.1 | hypothetical protein | - |
| C3351_RS08320 () | 1714729..1714905 | + | 177 | WP_009888840.1 | hypothetical protein | - |
| C3351_RS08325 () | 1714906..1716216 | + | 1311 | WP_009893136.1 | phage tail sheath family protein | - |
| C3351_RS08330 () | 1716233..1716702 | + | 470 | Protein_1505 | phage tail tube protein | - |
| C3351_RS08335 () | 1716761..1717588 | + | 828 | WP_009888843.1 | hypothetical protein | - |
| C3351_RS08340 () | 1717660..1718100 | + | 441 | WP_003429853.1 | phage portal protein | - |
| C3351_RS08350 () | 1718441..1718602 | + | 162 | WP_003429855.1 | hypothetical protein | Toxin Detail |
| - () | 1718522..1718661 | - | 140 | NuclAT_1 | - | Antitoxin Detail |
| - () | 1718522..1718661 | - | 140 | NuclAT_2 | - | Antitoxin Detail |
| - () | 1719006..1719054 | - | 49 | NuclAT_4 | - | - |
| - () | 1719006..1719054 | - | 49 | NuclAT_5 | - | - |
| C3351_RS08355 () | 1719939..1720127 | + | 189 | WP_003429858.1 | hypothetical protein | - |
| C3351_RS08360 () | 1720246..1721112 | + | 867 | WP_009888845.1 | hypothetical protein | - |
| C3351_RS08370 () | 1721977..1722504 | + | 528 | WP_009888847.1 | DUF4352 domain-containing protein | - |
| C3351_RS08375 () | 1722642..1723409 | + | 768 | WP_009888848.1 | DUF4428 domain-containing protein | - |
| C3351_RS08380 () | 1723475..1725847 | + | 2373 | WP_009893138.1 | tape measure protein | - |
| C3351_RS08385 () | 1725864..1726553 | + | 690 | WP_009888849.1 | LysM peptidoglycan-binding domain-containing protein | - |
| C3351_RS08390 () | 1726546..1728438 | + | 1893 | WP_009893140.1 | C40 family peptidase | - |
| C3351_RS08395 () | 1728452..1728712 | + | 261 | WP_009893142.1 | DUF2577 domain-containing protein | - |
| C3351_RS08400 () | 1728717..1729136 | + | 420 | WP_009888851.1 | DUF2634 domain-containing protein | - |
| C3351_RS08405 () | 1729137..1730186 | + | 1050 | WP_009888852.1 | baseplate J/gp47 family protein | - |
| C3351_RS08410 () | 1730179..1730796 | + | 618 | WP_003433579.1 | YmfQ family protein | - |
| C3351_RS08415 () | 1730808..1731833 | + | 1026 | WP_009888853.1 | phage tail protein | - |
| C3351_RS08420 () | 1731850..1733376 | + | 1527 | WP_009893144.1 | hypothetical protein | - |
| C3351_RS08425 () | 1733391..1733684 | + | 294 | WP_009889429.1 | hypothetical protein | - |
| C3351_RS08430 () | 1733684..1733866 | + | 183 | WP_009889431.1 | hypothetical protein | - |
| C3351_RS08435 () | 1733900..1734466 | + | 567 | WP_009889434.1 | hypothetical protein | - |
| C3351_RS08440 () | 1734497..1734787 | + | 291 | WP_009889435.1 | hypothetical protein | - |
| C3351_RS08445 () | 1734791..1735048 | + | 258 | WP_009889440.1 | phage holin family protein | - |
| C3351_RS08450 () | 1735309..1736172 | + | 864 | WP_003429958.1 | Abi family protein | - |
| C3351_RS08455 () | 1736251..1737063 | + | 813 | WP_009889444.1 | N-acetylmuramoyl-L-alanine amidase | - |
| C3351_RS08460 () | 1737157..1739556 | + | 2400 | WP_009893147.1 | cell wall-binding repeat-containing protein | - |
| C3351_RS08465 () | 1739597..1739782 | - | 186 | WP_003433687.1 | hypothetical protein | - |
| C3351_RS08470 () | 1740477..1741154 | + | 678 | WP_009889448.1 | manganese catalase family protein | - |
| C3351_RS08475 () | 1741328..1743364 | + | 2037 | WP_009889450.1 | thioredoxin domain-containing protein | - |
| C3351_RS08480 () | 1743555..1744121 | - | 567 | WP_009889452.1 | MarR family transcriptional regulator | - |
| C3351_RS08485 () | 1744405..1744932 | + | 528 | Protein_1534 | alpha/beta fold hydrolase | - |
| C3351_RS08495 () | 1745564..1745671 | + | 108 | WP_009889455.1 | transposase | - |
| C3351_RS08500 () | 1745673..1746790 | + | 1118 | Protein_1536 | IS200/IS605 family element transposase accessory protein TnpB | - |
| C3351_RS08505 () | 1746855..1747316 | + | 462 | WP_009889460.1 | alpha/beta hydrolase | - |
| C3351_RS08510 () | 1747781..1748995 | + | 1215 | WP_009893153.1 | helix-turn-helix transcriptional regulator | - |
| C3351_RS08515 () | 1749415..1749936 | - | 522 | WP_009889468.1 | GNAT family N-acetyltransferase | - |
| C3351_RS08520 () | 1750292..1751089 | + | 798 | WP_003436560.1 | 3D domain-containing protein | - |
| C3351_RS08525 () | 1751199..1751789 | + | 591 | WP_009893156.1 | SGNH/GDSL hydrolase family protein | - |
| C3351_RS08530 () | 1751855..1753552 | + | 1698 | WP_009893157.1 | phospho-sugar mutase | - |
| C3351_RS08535 () | 1753766..1754605 | + | 840 | WP_003436555.1 | YihY/virulence factor BrkB family protein | - |
Similar MGE(s)
Similar MGE(s) is defined as other TA-related MGE(s) with Mash distance < 0.01 to this MGE.
| Detail | Organism | MGE type | Related TA | Genome accession | Coordinates | Mash distance |
|---|---|---|---|---|---|---|
| Clostridium difficile R20291 | Prophage | TA24266 | NC_013316 | 1671047..1738184 | 0 |