MGE detailed information
MGE type: Prophage MGE length: 66721 bp
Accession: NZ_CP011968 Location: 254924..321644 Organism: Clostridioides difficile ATCC 9689 = DSM 1296 Replicon: chromosome
Accession: NZ_CP011968 Location: 254924..321644 Organism: Clostridioides difficile ATCC 9689 = DSM 1296 Replicon: chromosome
Gene structure
The 5 kb flanking regions of this MGE are displayed.
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| CDIF1296T_RS01490 () | 250516..251436 | + | 921 | WP_003434504.1 | aspartate carbamoyltransferase | - |
| CDIF1296T_RS01495 () | 251475..252167 | + | 693 | WP_003434506.1 | dihydroorotate dehydrogenase electron transfer subunit | - |
| CDIF1296T_RS01500 () | 252160..253062 | + | 903 | WP_003434510.1 | dihydroorotate dehydrogenase | - |
| CDIF1296T_RS01505 () | 253147..253731 | + | 585 | WP_003420885.1 | orotate phosphoribosyltransferase | - |
| CDIF1296T_RS01510 () | 253946..254872 | + | 927 | WP_009895279.1 | 2-dehydropantoate 2-reductase | - |
| CDIF1296T_RS01515 () | 254924..255814 | - | 891 | WP_003435002.1 | LysR family transcriptional regulator | - |
| CDIF1296T_RS01520 () | 256002..257033 | + | 1032 | WP_003425354.1 | putative sulfate exporter family transporter | - |
| CDIF1296T_RS01525 () | 257327..258202 | + | 876 | WP_009895282.1 | 8-oxoguanine DNA glycosylase | - |
| CDIF1296T_RS01530 () | 258220..259710 | + | 1491 | WP_009888027.1 | cardiolipin synthase | - |
| CDIF1296T_RS01535 () | 259903..260187 | + | 285 | WP_003420907.1 | co-chaperone GroES | - |
| CDIF1296T_RS01540 () | 260220..261848 | + | 1629 | WP_003435012.1 | 60 kDa chaperonin | VF |
| CDIF1296T_RS01545 () | 262110..262850 | + | 741 | WP_009895285.1 | nickel pincer cofactor biosynthesis protein LarB | - |
| CDIF1296T_RS01550 () | 262934..263668 | + | 735 | WP_009895287.1 | nickel pincer cofactor biosynthesis protein LarC | - |
| CDIF1296T_RS01555 () | 263698..264117 | + | 420 | WP_016729228.1 | DUF111 family protein | - |
| CDIF1296T_RS01560 () | 264499..266034 | + | 1536 | WP_003425341.1 | glutamine-hydrolyzing GMP synthase | - |
| CDIF1296T_RS01565 () | 266111..267157 | - | 1047 | WP_025985731.1 | Putative prophage phiRv2 integrase ; Integrase | Integrase |
| CDIF1296T_RS01570 () | 267234..267449 | - | 216 | WP_009901700.1 | helix-turn-helix domain-containing protein | - |
| CDIF1296T_RS01575 () | 267938..268303 | - | 366 | WP_009901702.1 | helix-turn-helix domain-containing protein | - |
| CDIF1296T_RS01580 () | 268487..268690 | + | 204 | WP_009901703.1 | putative HTH-type transcriptional regulator | VF |
| CDIF1296T_RS01585 () | 268987..269166 | - | 180 | WP_009901705.1 | Arc family DNA-binding protein | - |
| CDIF1296T_RS01590 () | 269302..269481 | + | 180 | WP_009901706.1 | hypothetical protein | - |
| CDIF1296T_RS01595 () | 269474..270262 | + | 789 | WP_009901707.1 | phage antirepressor Ant | - |
| CDIF1296T_RS01600 () | 270298..270552 | + | 255 | WP_009901708.1 | hypothetical protein | - |
| CDIF1296T_RS01605 () | 270588..270812 | + | 225 | WP_009901709.1 | DeoR family transcriptional regulator | - |
| CDIF1296T_RS01610 () | 270914..271141 | + | 228 | WP_009901711.1 | hypothetical protein | - |
| CDIF1296T_RS01615 () | 271154..271471 | + | 318 | WP_009901712.1 | hypothetical protein | - |
| CDIF1296T_RS01620 () | 271554..272063 | + | 510 | WP_009901713.1 | siphovirus Gp157 family protein | - |
| CDIF1296T_RS01625 () | 272073..272681 | + | 609 | WP_009901714.1 | ERF family protein | - |
| CDIF1296T_RS01630 () | 272691..273572 | + | 882 | WP_009901715.1 | DnaD domain protein | - |
| CDIF1296T_RS01635 () | 273633..273806 | + | 174 | WP_009901716.1 | hypothetical protein | - |
| CDIF1296T_RS01640 () | 273824..274231 | + | 408 | WP_009901717.1 | single-stranded DNA-binding protein | - |
| CDIF1296T_RS01645 () | 274306..274716 | + | 411 | WP_009901718.1 | hypothetical protein | - |
| CDIF1296T_RS01650 () | 274703..274954 | + | 252 | WP_009901719.1 | hypothetical protein | - |
| CDIF1296T_RS01655 () | 274971..275354 | + | 384 | WP_018112756.1 | hypothetical protein | - |
| CDIF1296T_RS01660 () | 275338..275472 | + | 135 | WP_074049749.1 | hypothetical protein | - |
| CDIF1296T_RS01665 () | 275459..275908 | + | 450 | WP_018112754.1 | hypothetical protein | - |
| CDIF1296T_RS01670 () | 275892..276008 | + | 117 | WP_018112753.1 | hypothetical protein | - |
| CDIF1296T_RS01675 () | 276335..276583 | + | 249 | WP_018112750.1 | hypothetical protein | - |
| CDIF1296T_RS01680 () | 276678..276899 | + | 222 | WP_018112749.1 | hypothetical protein | - |
| CDIF1296T_RS01685 () | 276896..277891 | + | 996 | WP_018112748.1 | nucleoid-associated protein | - |
| CDIF1296T_RS01690 () | 277900..278625 | + | 726 | WP_018112747.1 | phosphoadenosine phosphosulfate reductase family protein | - |
| CDIF1296T_RS01695 () | 278622..278798 | + | 177 | WP_018112746.1 | hypothetical protein | - |
| CDIF1296T_RS01700 () | 278825..279154 | + | 330 | WP_018112745.1 | hypothetical protein | - |
| CDIF1296T_RS01705 () | 279543..279758 | + | 216 | WP_018112743.1 | DUF3850 domain-containing protein | - |
| CDIF1296T_RS01710 () | 279776..280183 | + | 408 | WP_018112742.1 | RusA family crossover junction endodeoxyribonuclease | - |
| CDIF1296T_RS01715 () | 280285..281133 | + | 849 | WP_015994384.1 | ORF6C domain-containing protein | - |
| CDIF1296T_RS01720 () | 281223..281711 | + | 489 | WP_011861022.1 | hypothetical protein | - |
| CDIF1296T_RS01725 () | 282245..282922 | + | 678 | WP_018112741.1 | Bro-N domain-containing protein | - |
| CDIF1296T_RS01730 () | 283300..283986 | + | 687 | WP_018112739.1 | helix-turn-helix domain-containing protein | - |
| CDIF1296T_RS01735 () | 283979..285208 | + | 1230 | WP_018112738.1 | PBSX family phage terminase large subunit | - |
| CDIF1296T_RS01740 () | 285213..286607 | + | 1395 | WP_018112737.1 | phage portal protein | - |
| CDIF1296T_RS01745 () | 286597..288132 | + | 1536 | WP_018112736.1 | minor capsid protein | - |
| CDIF1296T_RS01750 () | 288134..288382 | + | 249 | WP_009888832.1 | hypothetical protein | - |
| CDIF1296T_RS01755 () | 288453..288698 | + | 246 | WP_018112735.1 | hypothetical protein | - |
| CDIF1296T_RS01760 () | 288700..289236 | + | 537 | WP_018112734.1 | hypothetical protein | - |
| CDIF1296T_RS01765 () | 289255..289527 | + | 273 | WP_018112733.1 | hypothetical protein | - |
| CDIF1296T_RS01770 () | 289578..289805 | + | 228 | WP_018112732.1 | hypothetical protein | - |
| CDIF1296T_RS01775 () | 289830..290423 | + | 594 | WP_021362372.1 | phage scaffolding protein | - |
| CDIF1296T_RS01780 () | 290439..290819 | + | 381 | WP_018112730.1 | hypothetical protein | - |
| CDIF1296T_RS01785 () | 290831..291850 | + | 1020 | WP_018112729.1 | major capsid protein | - |
| CDIF1296T_RS01790 () | 291861..292205 | + | 345 | WP_018112728.1 | phage head-tail connector protein | - |
| CDIF1296T_RS01795 () | 292205..292567 | + | 363 | WP_018112727.1 | hypothetical protein | - |
| CDIF1296T_RS01800 () | 292567..292992 | + | 426 | WP_018112726.1 | HK97 gp10 family phage protein | - |
| CDIF1296T_RS01805 () | 292985..293422 | + | 438 | WP_018112725.1 | hypothetical protein | - |
| CDIF1296T_RS01810 () | 293415..293591 | + | 177 | WP_009896638.1 | hypothetical protein | - |
| CDIF1296T_RS01815 () | 293592..294902 | + | 1311 | WP_009896640.1 | phage tail sheath family protein | - |
| CDIF1296T_RS01820 () | 294923..295399 | + | 477 | WP_018112724.1 | phage tail tube protein | - |
| CDIF1296T_RS01825 () | 295468..295908 | + | 441 | WP_018112723.1 | phage portal protein | - |
| CDIF1296T_RS01830 () | 295908..296102 | + | 195 | WP_011861033.1 | hypothetical protein | - |
| CDIF1296T_RS01835 () | 296249..296410 | + | 162 | WP_003429855.1 | hypothetical protein | Toxin Detail |
| - () | 296330..296463 | - | 134 | NuclAT_1 | - | Antitoxin Detail |
| - () | 296330..296463 | - | 134 | NuclAT_2 | - | Antitoxin Detail |
| - () | 296808..296913 | - | 106 | NuclAT_4 | - | - |
| - () | 296808..296913 | - | 106 | NuclAT_5 | - | - |
| CDIF1296T_RS01840 () | 297735..297908 | + | 174 | WP_018112722.1 | hypothetical protein | - |
| CDIF1296T_RS01845 () | 298032..298373 | + | 342 | Protein_266 | toxin Bro | - |
| CDIF1296T_RS01850 () | 298464..298859 | + | 396 | WP_074089574.1 | hypothetical protein | - |
| CDIF1296T_RS01855 () | 299210..299980 | + | 771 | WP_018112719.1 | SHOCT domain-containing protein | - |
| CDIF1296T_RS01860 () | 300047..302416 | + | 2370 | WP_009901478.1 | tape measure protein | - |
| CDIF1296T_RS01865 () | 302432..303121 | + | 690 | WP_009901477.1 | LysM peptidoglycan-binding domain-containing protein | - |
| CDIF1296T_RS01870 () | 303114..305084 | + | 1971 | WP_018112718.1 | Gamma-D-glutamyl-L-lysine dipeptidyl-peptidase | VF |
| CDIF1296T_RS01875 () | 305098..305358 | + | 261 | WP_009901352.1 | DUF2577 domain-containing protein | - |
| CDIF1296T_RS01880 () | 305363..305782 | + | 420 | WP_011861039.1 | DUF2634 domain-containing protein | - |
| CDIF1296T_RS01885 () | 305783..306832 | + | 1050 | WP_018112717.1 | baseplate J/gp47 family protein | - |
| CDIF1296T_RS01890 () | 306825..307442 | + | 618 | WP_009896663.1 | YmfQ family protein | - |
| CDIF1296T_RS01895 () | 307454..308479 | + | 1026 | WP_018112716.1 | phage tail protein | - |
| CDIF1296T_RS01900 () | 308494..310182 | + | 1689 | WP_009901440.1 | hypothetical protein | - |
| CDIF1296T_RS01905 () | 310198..310491 | + | 294 | WP_009896669.1 | hypothetical protein | - |
| CDIF1296T_RS01910 () | 310491..310673 | + | 183 | WP_009899649.1 | hypothetical protein | - |
| CDIF1296T_RS01915 () | 310771..310989 | + | 219 | WP_009894435.1 | hypothetical protein | - |
| CDIF1296T_RS01920 () | 310997..311488 | + | 492 | WP_074048375.1 | phage holin family protein | - |
| CDIF1296T_RS01925 () | 311488..312300 | + | 813 | WP_021359648.1 | N-acetylmuramoyl-L-alanine amidase | - |
| CDIF1296T_RS01930 () | 312381..312743 | + | 363 | WP_015984864.1 | hypothetical protein | - |
| CDIF1296T_RS01935 () | 312909..313427 | + | 519 | WP_009898407.1 | hypothetical protein | - |
| CDIF1296T_RS01940 () | 313491..315077 | - | 1587 | WP_015984865.1 | hypothetical protein | - |
| CDIF1296T_RS01945 () | 315053..315574 | - | 522 | WP_009898403.1 | ImmA/IrrE family metallo-endopeptidase | - |
| CDIF1296T_RS01950 () | 316276..316464 | - | 189 | WP_009898401.1 | hypothetical protein | - |
| CDIF1296T_RS01955 () | 317112..317287 | - | 176 | Protein_288 | hypothetical protein | - |
| CDIF1296T_RS01960 () | 317648..318037 | + | 390 | WP_009901721.1 | BlaI/MecI/CopY family transcriptional regulator | - |
| CDIF1296T_RS01965 () | 318130..318510 | + | 381 | WP_009901722.1 | BlaI/MecI/CopY family transcriptional regulator | - |
| CDIF1296T_RS01970 () | 318661..318785 | + | 125 | Protein_291 | hypothetical protein | - |
| CDIF1296T_RS01975 () | 319230..320621 | + | 1392 | WP_018112701.1 | metallophosphoesterase | - |
| CDIF1296T_RS01980 () | 320769..321644 | - | 876 | WP_009895293.1 | LysR family transcriptional regulator | - |
| CDIF1296T_RS01985 () | 321764..322327 | + | 564 | WP_009895294.1 | chromate transporter | - |
| CDIF1296T_RS01990 () | 322324..322890 | + | 567 | WP_003420939.1 | chromate transporter | - |
| CDIF1296T_RS01995 () | 323019..323255 | - | 237 | WP_003425320.1 | hypothetical protein | - |
Similar MGE(s)
Similar MGE(s) is defined as other TA-related MGE(s) with Mash distance < 0.01 to this MGE.
| Detail | Organism | MGE type | Related TA | Genome accession | Coordinates | Mash distance |
|---|