MGE detailed information
MGE type: Prophage MGE length: 67138 bp
Accession: NC_013316 Location: 1671047..1738184 Organism: Clostridium difficile R20291 Replicon: chromosome
Accession: NC_013316 Location: 1671047..1738184 Organism: Clostridium difficile R20291 Replicon: chromosome
Gene structure
The 5 kb flanking regions of this MGE are displayed.
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| CDR20291_RS07690 (CDR20291_1411) | 1666152..1666913 | + | 762 | WP_009889424.1 | M48 family metallopeptidase | - |
| CDR20291_RS07695 (CDR20291_1412) | 1667444..1667683 | + | 240 | WP_003429800.1 | ACT domain-containing protein | - |
| CDR20291_RS07700 (CDR20291_1413) | 1667953..1668948 | + | 996 | WP_012816147.1 | ketol-acid reductoisomerase | - |
| CDR20291_RS07705 (CDR20291_1414) | 1669001..1670689 | + | 1689 | WP_009888799.1 | biosynthetic-type acetolactate synthase large subunit | - |
| CDR20291_RS07710 (CDR20291_1415) | 1671047..1672177 | - | 1131 | WP_003429803.1 | Putative prophage phiRv2 integrase ; Integrase | Integrase |
| CDR20291_RS07715 (CDR20291_1416) | 1672256..1672963 | - | 708 | WP_009888800.1 | HIRAN domain-containing protein | - |
| CDR20291_RS07720 (CDR20291_1417) | 1672976..1673845 | - | 870 | WP_009888801.1 | HipA domain-containing protein | - |
| CDR20291_RS07725 (CDR20291_1418) | 1674465..1674971 | - | 507 | WP_003429804.1 | ImmA/IrrE family metallo-endopeptidase | - |
| CDR20291_RS07730 | 1675047..1675595 | - | 549 | WP_009893126.1 | helix-turn-helix domain-containing protein | - |
| CDR20291_RS07735 | 1675607..1675948 | - | 342 | WP_009888806.1 | XRE family transcriptional regulator | - |
| CDR20291_RS07740 | 1676125..1676328 | + | 204 | WP_009893129.1 | helix-turn-helix domain-containing protein | - |
| CDR20291_RS07745 (CDR20291_1419) | 1676376..1677185 | + | 810 | WP_009888810.1 | phage antirepressor | - |
| CDR20291_RS07750 | 1677232..1677441 | + | 210 | WP_009888812.1 | hypothetical protein | - |
| CDR20291_RS07755 | 1677451..1677825 | - | 375 | WP_003433505.1 | hypothetical protein | - |
| CDR20291_RS07760 | 1677901..1678098 | + | 198 | WP_009888813.1 | helix-turn-helix transcriptional regulator | - |
| CDR20291_RS07765 | 1678129..1678521 | + | 393 | WP_009888815.1 | helix-turn-helix domain-containing protein | - |
| CDR20291_RS07770 | 1678502..1678651 | + | 150 | WP_003429817.1 | hypothetical protein | - |
| CDR20291_RS07775 (CDR20291_1420) | 1678722..1679159 | + | 438 | WP_003433513.1 | hypothetical protein | - |
| CDR20291_RS07780 (CDR20291_1421) | 1679171..1680337 | + | 1167 | WP_009888818.1 | DUF2800 domain-containing protein | - |
| CDR20291_RS07785 | 1680352..1680687 | + | 336 | WP_009888819.1 | hypothetical protein | - |
| CDR20291_RS07790 (CDR20291_1422) | 1680740..1681312 | + | 573 | WP_003429822.1 | DNA-directed RNA polymerase sigma-70 factor | - |
| CDR20291_RS07795 (CDR20291_1423) | 1681335..1681907 | + | 573 | WP_003433516.1 | DUF2815 family protein | - |
| CDR20291_RS07800 (CDR20291_1424) | 1681907..1683865 | + | 1959 | WP_009888821.1 | DNA polymerase | - |
| CDR20291_RS07805 (CDR20291_1425) | 1683877..1686294 | + | 2418 | WP_009888822.1 | virulence-associated E family protein | - |
| CDR20291_RS07810 | 1686576..1686902 | + | 327 | WP_003433522.1 | VRR-NUC domain-containing protein | - |
| CDR20291_RS07815 (CDR20291_1426) | 1686851..1688221 | + | 1371 | WP_009888823.1 | DEAD/DEAH box helicase | - |
| CDR20291_RS07820 | 1688245..1688382 | + | 138 | WP_009888824.1 | hypothetical protein | - |
| CDR20291_RS07825 (CDR20291_1427) | 1688375..1688854 | + | 480 | WP_009888825.1 | sigma-70 region 4 domain-containing protein | - |
| CDR20291_RS07830 (CDR20291_1428) | 1689137..1689686 | + | 550 | Protein_1485 | Bro-N domain-containing protein | - |
| CDR20291_RS07835 (CDR20291_1429) | 1689881..1690855 | + | 975 | WP_009888827.1 | hypothetical protein | - |
| CDR20291_RS07840 (CDR20291_1430) | 1690876..1691385 | + | 510 | WP_003429834.1 | hypothetical protein | - |
| CDR20291_RS07845 (CDR20291_1431) | 1691455..1692147 | + | 693 | WP_009888829.1 | helix-turn-helix domain-containing protein | - |
| CDR20291_RS07850 (CDR20291_1432) | 1692125..1693378 | + | 1254 | WP_012816148.1 | PBSX family phage terminase large subunit | - |
| CDR20291_RS07855 (CDR20291_1433) | 1693384..1694826 | + | 1443 | WP_009888831.1 | phage portal protein | - |
| CDR20291_RS07860 (CDR20291_1434) | 1694816..1696351 | + | 1536 | WP_009893134.1 | minor capsid protein | - |
| CDR20291_RS07865 | 1696353..1696601 | + | 249 | WP_009888832.1 | hypothetical protein | - |
| CDR20291_RS07870 (CDR20291_1435) | 1696669..1697232 | + | 564 | WP_009888833.1 | phage scaffolding protein | - |
| CDR20291_RS07875 (CDR20291_1436) | 1697244..1698134 | + | 891 | WP_009888834.1 | hypothetical protein | - |
| CDR20291_RS07880 | 1698153..1698386 | + | 234 | WP_009888835.1 | hypothetical protein | - |
| CDR20291_RS07885 (CDR20291_1437) | 1698396..1698797 | + | 402 | WP_009888836.1 | hypothetical protein | - |
| CDR20291_RS07890 (CDR20291_1438) | 1698791..1699138 | + | 348 | WP_003433540.1 | hypothetical protein | - |
| CDR20291_RS07895 | 1699138..1699428 | + | 291 | WP_009893135.1 | HK97 gp10 family phage protein | - |
| CDR20291_RS07900 (CDR20291_1439) | 1699538..1700344 | + | 807 | WP_009888838.1 | hypothetical protein | - |
| CDR20291_RS07905 (CDR20291_1440) | 1700693..1701130 | + | 438 | WP_009888839.1 | hypothetical protein | - |
| CDR20291_RS07910 | 1701123..1701299 | + | 177 | WP_009888840.1 | hypothetical protein | - |
| CDR20291_RS07915 (CDR20291_1441) | 1701300..1702610 | + | 1311 | WP_009893136.1 | phage tail sheath family protein | - |
| CDR20291_RS07920 (CDR20291_1442) | 1702627..1703097 | + | 471 | WP_009888842.1 | phage tail tube protein | - |
| CDR20291_RS07925 (CDR20291_1443) | 1703156..1703983 | + | 828 | WP_009888843.1 | hypothetical protein | - |
| CDR20291_RS07930 (CDR20291_1444) | 1704055..1704495 | + | 441 | WP_003429853.1 | phage portal protein | - |
| CDR20291_RS07935 (CDR20291_1445) | 1704836..1704997 | + | 162 | WP_003429855.1 | hypothetical protein | Toxin Detail |
| - | 1704917..1705056 | - | 140 | - | - | Antitoxin Detail |
| CDR20291_RS07940 | 1706334..1706522 | + | 189 | WP_003429858.1 | hypothetical protein | - |
| CDR20291_RS07945 (CDR20291_1446) | 1706641..1707507 | + | 867 | WP_009888845.1 | hypothetical protein | - |
| CDR20291_RS07950 (CDR20291_1447) | 1708372..1708899 | + | 528 | WP_009888847.1 | DUF4352 domain-containing protein | - |
| CDR20291_RS07955 (CDR20291_1448) | 1709037..1709804 | + | 768 | WP_009888848.1 | DUF4428 domain-containing protein | - |
| CDR20291_RS07960 (CDR20291_1449) | 1709870..1712242 | + | 2373 | WP_009893138.1 | tape measure protein | - |
| CDR20291_RS07965 (CDR20291_1450) | 1712259..1712948 | + | 690 | WP_009888849.1 | LysM peptidoglycan-binding domain-containing protein | - |
| CDR20291_RS07970 (CDR20291_1451) | 1712941..1714833 | + | 1893 | WP_009893140.1 | hypothetical protein | VF |
| CDR20291_RS07975 (CDR20291_1452) | 1714847..1715107 | + | 261 | WP_009893142.1 | DUF2577 domain-containing protein | - |
| CDR20291_RS07980 (CDR20291_1453) | 1715112..1715531 | + | 420 | WP_009888851.1 | DUF2634 domain-containing protein | - |
| CDR20291_RS07985 (CDR20291_1454) | 1715532..1716581 | + | 1050 | WP_009888852.1 | baseplate J/gp47 family protein | - |
| CDR20291_RS07990 (CDR20291_1455) | 1716574..1717191 | + | 618 | WP_003433579.1 | YmfQ family protein | - |
| CDR20291_RS07995 (CDR20291_1456) | 1717203..1718228 | + | 1026 | WP_009888853.1 | phage tail protein | - |
| CDR20291_RS08000 (CDR20291_1457) | 1718245..1719771 | + | 1527 | WP_009893144.1 | hypothetical protein | - |
| CDR20291_RS08005 (CDR20291_1458) | 1719786..1720079 | + | 294 | WP_009889429.1 | hypothetical protein | - |
| CDR20291_RS08010 (CDR20291_1459) | 1720079..1720261 | + | 183 | WP_009889431.1 | hypothetical protein | - |
| CDR20291_RS08015 (CDR20291_1460) | 1720295..1720861 | + | 567 | WP_009889434.1 | hypothetical protein | - |
| CDR20291_RS08020 | 1720892..1721182 | + | 291 | WP_009889435.1 | hypothetical protein | - |
| CDR20291_RS08025 (CDR20291_1461) | 1721186..1721443 | + | 258 | WP_009889440.1 | phage holin family protein | - |
| CDR20291_RS08030 (CDR20291_1462) | 1721704..1722567 | + | 864 | WP_003429958.1 | Abi family protein | - |
| CDR20291_RS08035 (CDR20291_1463) | 1722646..1723458 | + | 813 | WP_009889444.1 | N-acetylmuramoyl-L-alanine amidase | - |
| CDR20291_RS08040 (CDR20291_1464) | 1723552..1725951 | + | 2400 | WP_009893147.1 | hypothetical protein | VF |
| CDR20291_RS08045 | 1725992..1726177 | - | 186 | WP_003433687.1 | hypothetical protein | - |
| CDR20291_RS08050 (CDR20291_1465) | 1726872..1727549 | + | 678 | WP_009889448.1 | manganese catalase family protein | - |
| CDR20291_RS08055 (CDR20291_1466) | 1727723..1729759 | + | 2037 | WP_009889450.1 | thioredoxin domain-containing protein | - |
| CDR20291_RS08060 (CDR20291_1467) | 1729950..1730516 | - | 567 | WP_009889452.1 | MarR family transcriptional regulator | - |
| CDR20291_RS08065 | 1730800..1731327 | + | 528 | Protein_1532 | alpha/beta fold hydrolase | - |
| CDR20291_RS08070 | 1731959..1732066 | + | 108 | WP_009889455.1 | transposase | - |
| CDR20291_RS08075 (CDR20291_1469) | 1732068..1733185 | + | 1118 | Protein_1534 | IS200-IS605 family transposase ISBth17 | Transposase |
| CDR20291_RS08080 | 1733250..1733711 | + | 462 | WP_009889460.1 | alpha/beta hydrolase | - |
| CDR20291_RS08085 (CDR20291_1470) | 1734176..1735390 | + | 1215 | WP_009893153.1 | ISNCY family transposase ISH7A | Transposase |
| CDR20291_RS08090 (CDR20291_1471) | 1735810..1736331 | - | 522 | WP_009889468.1 | GNAT family N-acetyltransferase | - |
| CDR20291_RS08095 (CDR20291_1472) | 1736687..1737484 | + | 798 | WP_003436560.1 | 3D domain-containing protein | - |
| CDR20291_RS08100 (CDR20291_1473) | 1737594..1738184 | + | 591 | WP_009893156.1 | SGNH/GDSL hydrolase family protein | - |
| CDR20291_RS08105 (CDR20291_1474) | 1738250..1739947 | + | 1698 | WP_009893157.1 | phospho-sugar mutase | - |
| CDR20291_RS08110 (CDR20291_1475) | 1740161..1741000 | + | 840 | WP_003436555.1 | YihY/virulence factor BrkB family protein | - |
Similar MGE(s)
Similar MGE(s) is defined as other TA-related MGE(s) with Mash distance < 0.01 to this MGE.
| Detail | Organism | MGE type | Related TA | Genome accession | Coordinates | Mash distance |
|---|---|---|---|---|---|---|
| Clostridium difficile CD196 | Prophage | TA24262 | NC_013315 | 1673422..1742321 | 0.004 | |
| Clostridium difficile 2007855 | Prophage | TA26337 | NC_017178 | 1666842..1733279 | 0 | |
| Clostridium difficile BI1 | Prophage | TA26341 | NC_017179 | 1683199..1749635 | 0 | |
| Clostridioides difficile strain DSM 27640 | Prophage | TA55110 | NZ_CP011848 | 1681045..1747482 | 0 | |
| Clostridioides difficile strain DSM 28196 | Prophage | TA56270 | NZ_CP012320 | 1683042..1749479 | 0 | |
| Clostridioides difficile strain R0104a | Prophage | TA89589 | NZ_CP025044 | 1576962..1639981 | 0.001 | |
| Clostridioides difficile strain CD-17-01474 | Prophage | TA95206 | NZ_CP026591 | 1681063..1747500 | 0 | |
| Clostridioides difficile strain CD-10-00484 | Prophage | TA95211 | NZ_CP026592 | 1684239..1750676 | 0 | |
| Clostridioides difficile strain 12-00008 | Prophage | TA95215 | NZ_CP026593 | 1684434..1750871 | 0 | |
| Clostridioides difficile strain 08-00495 | Prophage | TA95219 | NZ_CP026594 | 1684676..1754629 | 0.001 | |
| Clostridioides difficile strain 12-00011 | Prophage | TA95223 | NZ_CP026595 | 1684744..1751181 | 0 | |
| Clostridioides difficile strain 10-00071 | Prophage | TA95227 | NZ_CP026596 | 1684538..1750975 | 0 | |
| Clostridioides difficile strain 10-00078 | Prophage | TA95231 | NZ_CP026597 | 1684653..1751789 | 0 | |
| Clostridioides difficile strain 09-00072 | Prophage | TA95239 | NZ_CP026599 | 1684614..1751051 | 0 | |
| Clostridioides difficile R20291 | Prophage | TA105643 | NZ_CP029423 | 1684612..1751049 | 0 | |
| Clostridioides difficile isolate MGYG-HGUT-02369 | Prophage | TA288705 | NZ_LR698984 | 1576962..1639981 | 0.001 |