6279

Detailed information of TA system    

experimentalExperimentally validated    

Overview


TA module


Type II Classification (family/domain) yjhX-yjhQ/-
Location 4533239..4534053 Replicon chromosome
Accession NC_000913
Organism Escherichia coli str. K-12 substr. MG1655

Toxin (Protein)


Gene name yjhX Uniprot ID Q2EEU2
Locus tag b4566 Protein ID YP_588477.1
Coordinates 4533796..4534053 (-) Length 86 a.a.

Antitoxin (Protein)


Gene name yjhQ Uniprot ID P39368
Locus tag b4307 Protein ID NP_418727.1
Coordinates 4533239..4533784 (-) Length 182 a.a.

Genomic Context


Locus tag Coordinates Strand Size (bp) Protein ID Product Description
b4304 4528930..4530243 - 1314 NP_418724.1 putative PTS enzyme IIC component SgcC -
b4565 4530255..4530533 - 279 YP_588476.1 putative PTS enzyme IIB component SgcB -
b4305 4530530..4531651 - 1122 NP_418725.4 putative endoglucanase with Zn-dependent exopeptidase domain -
b4306 4532437..4533183 - 747 NP_418726.1 putative methyltransferase YjhP -
b4307 4533239..4533784 - 546 NP_418727.1 putative acetyltransferase TopAI antitoxin YjhQ Antitoxin
b4566 4533796..4534053 - 258 YP_588477.1 toxin of the TopAI-YjhQ toxin-antitoxin system, TopA inhibitor Toxin
b4802 4536597..4536695 + 99 YP_010051216.1 protein YthB -
b4309 4536614..4537594 - 981 NP_418729.1 N-acetyl-9-O-acetylneuraminate esterase -
b4310 4537659..4538765 - 1107 NP_418730.4 N-acetylneuraminate mutarotase -

Associated MGEs


MGE
detail
Similar
MGEs
Relative
position
MGE Type Cargo ARG Virulence gene Coordinates Length (bp)
inside Genomic island - fimB / fimE / fimA / fimI / fimC 4533239..4545029 11790


Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.


Domains


Predicted by InterproScan

Toxin

(1-85)

Antitoxin

(18-121)


Sequences


Toxin        


Download         Length: 86 a.a.        Molecular weight: 9734.29 Da        Isoelectric Point: 11.0090

>T6279 YP_588477.1 NC_000913:c4534053-4533796 [Escherichia coli str. K-12 substr. MG1655]
MNLSRQEQHTLHVLAKGRRIAHVRDSSGRVTSVECYSREGLLLTDCTLAVFKKLKTKKLIKSVNGQPYRINTTELNKVRA
QLDNR

Download         Length: 258 bp

>T6279 NC_000913:c4534053-4533796 [Escherichia coli str. K-12 substr. MG1655]
ATGAATTTATCCCGTCAGGAACAACATACCTTACACGTTCTCGCTAAAGGTAGACGTATTGCGCACGTCCGCGATTCTTC
AGGCCGCGTCACTTCCGTTGAATGCTACAGCCGCGAAGGGCTGTTGCTGACCGACTGCACGCTCGCCGTCTTCAAAAAAC
TCAAAACCAAAAAACTTATCAAGTCCGTCAATGGCCAGCCCTATCGAATCAACACCACCGAGCTGAATAAAGTTCGCGCT
CAGCTCGATAATCGCTAA

Antitoxin


Download         Length: 182 a.a.        Molecular weight: 19956.90 Da        Isoelectric Point: 6.3277

>AT6279 NP_418727.1 NC_000913:c4533784-4533239 [Escherichia coli str. K-12 substr. MG1655]
MTVHHFTFHITDKSDASDIREVETRAFGFSKEADLVASLLEDESARPALSLLARYEGKAVGHILFTRATFKGEMDSPLMH
ILAPLAVIPEYQGMGVGGRLIRTGIEHLRLMGCQTVFVLGHATYYPRHGFEPCAGDKGYPAPYPIPEEHKACWMMQSLTA
QPMTLTGHIRCADPDETGALT

Download         Length: 546 bp

>AT6279 NC_000913:c4533784-4533239 [Escherichia coli str. K-12 substr. MG1655]
ATGACAGTACACCACTTCACTTTTCATATCACAGATAAAAGTGATGCCAGTGATATCCGGGAAGTCGAAACCCGCGCATT
TGGCTTCAGCAAAGAAGCCGATTTAGTGGCCTCTTTACTTGAGGATGAAAGCGCGCGCCCCGCGTTATCGCTGCTAGCCC
GGTATGAAGGCAAAGCCGTCGGGCATATTTTATTTACCCGGGCAACCTTCAAAGGAGAAATGGATTCACCGTTGATGCAC
ATCCTCGCTCCCCTGGCGGTCATACCGGAATACCAAGGGATGGGCGTGGGAGGACGGTTGATACGCACTGGCATCGAGCA
CCTGAGGTTGATGGGCTGCCAGACGGTTTTTGTTCTCGGCCACGCCACCTATTACCCCCGACATGGGTTCGAACCCTGTG
CCGGAGACAAAGGCTATCCGGCACCTTATCCCATCCCGGAGGAGCACAAAGCCTGCTGGATGATGCAATCACTCACCGCT
CAGCCCATGACCCTGACCGGCCACATCCGGTGCGCAGACCCTGATGAAACCGGAGCACTGACGTGA

Similar Proteins


Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
Protein Organism Identities (%) Coverage (%) Ha-value

Structures


Toxin

Source ID Structure
AlphaFold DB Q2EEU2


Antitoxin

Source ID Structure
AlphaFold DB P39368

References


(1) Yoshihiro Yamaguchi et al. (2015) An endogenous protein inhibitor, YjhX (TopAI), for topoisomerase I from Escherichia coli. Nucleic Acids Research 43(21):10387-96. [PubMed:26553797] experimental


experimental experimental literature