MGE detailed information
MGE type: Genomic_island MGE length: 11791 bp
Accession: NZ_CP026350 Location: 4533241..4545031 Organism: Escherichia coli strain 5FA Replicon: chromosome
Accession: NZ_CP026350 Location: 4533241..4545031 Organism: Escherichia coli strain 5FA Replicon: chromosome
Gene structure
The 5 kb flanking regions of this MGE are displayed.
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| C2R13_RS23390 () | 4528932..4530245 | - | 1314 | WP_000460843.1 | galactitol-specific PTS transporter subunit IIC | - |
| C2R13_RS23395 () | 4530257..4530535 | - | 279 | WP_000722973.1 | PTS sugar transporter subunit IIB | - |
| C2R13_RS23400 () | 4530532..4531653 | - | 1122 | WP_000010829.1 | M42 family metallopeptidase | - |
| C2R13_RS24380 () | 4531898..4532014 | - | 117 | Protein_4264 | VOC family protein | - |
| C2R13_RS23405 () | 4532052..4532270 | - | 219 | Protein_4265 | hypothetical protein | - |
| C2R13_RS23410 () | 4532439..4533185 | - | 747 | WP_000354251.1 | class I SAM-dependent methyltransferase | - |
| C2R13_RS23415 () | 4533241..4533786 | - | 546 | WP_001309181.1 | N-acetyltransferase | Antitoxin Detail |
| C2R13_RS23420 () | 4533798..4534055 | - | 258 | WP_001054376.1 | hypothetical protein | Toxin Detail |
| C2R13_RS23430 () | 4534432..4534677 | - | 246 | Protein_4269 | GNAT family N-acetyltransferase | - |
| C2R13_RS23440 () | 4534793..4536033 | + | 1241 | Protein_4270 | helicase YjhR | - |
| C2R13_RS23445 () | 4536616..4537596 | - | 981 | WP_000991438.1 | 9-O-acetyl-N-acetylneuraminic acid deacetylase | - |
| C2R13_RS23450 () | 4537661..4538767 | - | 1107 | WP_001309184.1 | N-acetylneuraminate epimerase | - |
| C2R13_RS23455 () | 4538787..4539503 | - | 717 | WP_001295734.1 | N-acetylneuraminic acid outer membrane channel NanC | - |
| C2R13_RS23470 () | 4540959..4541561 | + | 603 | WP_000790583.1 | Tyrosine recombinase XerC | VF |
| C2R13_RS23475 () | 4542039..4542635 | + | 597 | WP_000044711.1 | Tyrosine recombinase XerD | VF |
| C2R13_RS23485 () | 4543117..4543665 | + | 549 | WP_000695564.1 | Type-1 fimbrial protein, A chain | VF |
| C2R13_RS23490 () | 4543730..4544269 | + | 540 | WP_000824114.1 | putative major fimbrial subunit LpfA | VF |
| C2R13_RS23495 () | 4544306..4545031 | + | 726 | WP_000066547.1 | Chaperone protein FimC | VF |
| C2R13_RS23500 () | 4545098..4547734 | + | 2637 | WP_000121005.1 | fimbrial usher FimD | - |
| C2R13_RS23505 () | 4547744..4548274 | + | 531 | WP_001244827.1 | type 1 fimbria minor subunit FimF | - |
| C2R13_RS23510 () | 4548287..4548790 | + | 504 | WP_000870592.1 | type 1 fimbria minor subunit FimG | - |
| C2R13_RS23515 () | 4548810..4549712 | + | 903 | WP_000832247.1 | type 1 fimbria D-mannose specific adhesin FimH | - |
Similar MGE(s)
Similar MGE(s) is defined as other TA-related MGE(s) with Mash distance < 0.01 to this MGE.
| Detail | Organism | MGE type | Related TA | Genome accession | Coordinates | Mash distance |
|---|---|---|---|---|---|---|
| Escherichia coli str. K-12 substr. MC4100 | Genomic island | TA20089 | HG738867 | 4419085..4430625 | 0.004 | |
| Escherichia coli str. K-12 substr. MG1655 | Genomic island | TA6279 | NC_000913 | 4533239..4545029 | 0 | |
| Escherichia coli str. K-12 substr. W3110 | Genomic island | TA21460 | NC_007779 | 4537919..4549709 | 0 | |
| Escherichia coli BW2952 | Genomic island | TA23876 | NC_012759 | 4469997..4481537 | 0.004 | |
| Escherichia coli DH1 | Genomic island | TA27426 | NC_017638 | 4513009..4524807 | 0 | |
| Escherichia coli BW25113 | Genomic island | TA48705 | NZ_CP009273 | 4523056..4534846 | 0 | |
| Escherichia coli str. K-12 substr. W3110 strain K-12 substr. ZK126 | Genomic island | TA68445 | NZ_CP017979 | 4432698..4444488 | 0 | |
| Escherichia coli str. K-12 substr. MC4100 strain K-12 | Genomic island | TA285034 | NZ_HG738867 | 4419085..4430625 | 0.004 |