MGE detailed information
MGE type: Genomic_island MGE length: 11029 bp
Accession: NZ_CP066836 Location: 2478774..2489802 Organism: Escherichia coli strain Ec-FL1-1X Replicon: chromosome
Accession: NZ_CP066836 Location: 2478774..2489802 Organism: Escherichia coli strain Ec-FL1-1X Replicon: chromosome
Gene structure
The 5 kb flanking regions of this MGE are displayed.
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| JH476_RS11960 (2474253) | 2474253..2474756 | - | 504 | WP_000870592.1 | type 1 fimbria minor subunit FimG | - |
| JH476_RS11965 (2474769) | 2474769..2475299 | - | 531 | WP_001244827.1 | type 1 fimbria minor subunit FimF | - |
| JH476_RS11970 (2475309) | 2475309..2477945 | - | 2637 | WP_000121002.1 | fimbrial usher FimD | - |
| JH476_RS11975 (2478012) | 2478012..2478737 | - | 726 | WP_000066560.1 | type 1 fimbria chaperone FimC | - |
| JH476_RS11980 (2478774) | 2478774..2479313 | - | 540 | WP_000824114.1 | hypothetical protein | VF |
| JH476_RS11985 (2479378) | 2479378..2479926 | - | 549 | WP_000695557.1 | hypothetical protein | VF |
| JH476_RS11990 (2480408) | 2480408..2481004 | - | 597 | WP_000044711.1 | Tyrosine recombinase XerC | VF |
| JH476_RS11995 (2481482) | 2481482..2482084 | - | 603 | WP_000790583.1 | Tyrosine recombinase XerC | VF |
| JH476_RS12000 (2483540) | 2483540..2484256 | + | 717 | WP_001295734.1 | N-acetylneuraminic acid outer membrane channel NanC | - |
| JH476_RS12005 (2484276) | 2484276..2485382 | + | 1107 | WP_001309184.1 | N-acetylneuraminate epimerase | - |
| JH476_RS12010 (2485447) | 2485447..2486427 | + | 981 | WP_000991438.1 | 9-O-acetyl-N-acetylneuraminic acid deacetylase | - |
| JH476_RS25950 (2486537) | 2486537..2486742 | + | 206 | Protein_2365 | HNH endonuclease | - |
| JH476_RS12015 (2487010) | 2487010..2488250 | - | 1241 | Protein_2366 | helicase YjhR | - |
| JH476_RS25955 (2488366) | 2488366..2488497 | + | 132 | WP_001309182.1 | hypothetical protein | - |
| JH476_RS12025 (2488988) | 2488988..2489245 | + | 258 | WP_001054376.1 | YjhX family toxin | Toxin Detail |
| JH476_RS12030 (2489257) | 2489257..2489802 | + | 546 | WP_001309181.1 | N-acetyltransferase | Antitoxin Detail |
| JH476_RS12035 (2489858) | 2489858..2490604 | + | 747 | WP_000354251.1 | class I SAM-dependent methyltransferase | - |
| JH476_RS12040 (2490773) | 2490773..2490991 | + | 219 | Protein_2371 | hypothetical protein | - |
| JH476_RS12045 (2491029) | 2491029..2491145 | + | 117 | Protein_2372 | VOC family protein | - |
| JH476_RS12050 (2491390) | 2491390..2492511 | + | 1122 | WP_000010829.1 | M42 family metallopeptidase | - |
| JH476_RS12055 (2492508) | 2492508..2492786 | + | 279 | WP_000722973.1 | PTS sugar transporter subunit IIB SgcB | - |
| JH476_RS12060 (2492798) | 2492798..2494111 | + | 1314 | WP_000460843.1 | PTS sugar transporter subunit IIC SgcC | - |
Similar MGE(s)
Similar MGE(s) is defined as other TA-related MGE(s) with Mash distance < 0.01 to this MGE.
| Detail | Organism | MGE type | Related TA | Genome accession | Coordinates | Mash distance |
|---|---|---|---|---|---|---|
| Escherichia coli str. K-12 substr. MC4100 | Genomic island | TA20089 | HG738867 | 4419085..4430625 | 0.007 | |
| Escherichia coli str. K-12 substr. MG1655 | Genomic island | TA6279 | NC_000913 | 4533239..4545029 | 0.002 | |
| Escherichia coli str. K-12 substr. W3110 | Genomic island | TA21460 | NC_007779 | 4537919..4549709 | 0.002 | |
| Escherichia coli BW2952 | Genomic island | TA23876 | NC_012759 | 4469997..4481537 | 0.007 | |
| Escherichia coli DH1 | Genomic island | TA27426 | NC_017638 | 4513009..4524807 | 0.003 | |
| Escherichia coli BW25113 | Genomic island | TA48705 | NZ_CP009273 | 4523056..4534846 | 0.002 | |
| Escherichia coli str. K-12 substr. W3110 strain K-12 substr. ZK126 | Genomic island | TA68445 | NZ_CP017979 | 4432698..4444488 | 0.002 | |
| Escherichia coli str. K-12 substr. MC4100 strain K-12 | Genomic island | TA285034 | NZ_HG738867 | 4419085..4430625 | 0.007 |