MGE detailed information
MGE type: Genomic_island MGE length: 11028 bp
Accession: NZ_CP043295 Location: 1909583..1920610 Organism: Escherichia coli strain WCHEC040047 Replicon: chromosome
Accession: NZ_CP043295 Location: 1909583..1920610 Organism: Escherichia coli strain WCHEC040047 Replicon: chromosome
Gene structure
The 5 kb flanking regions of this MGE are displayed.
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| FYK54_RS09180 (1905062) | 1905062..1905565 | - | 504 | WP_000870592.1 | type 1 fimbria minor subunit FimG | - |
| FYK54_RS09185 (1905578) | 1905578..1906108 | - | 531 | WP_001244827.1 | type 1 fimbria minor subunit FimF | - |
| FYK54_RS09190 (1906118) | 1906118..1908754 | - | 2637 | WP_000121002.1 | fimbrial usher FimD | - |
| FYK54_RS09195 (1908821) | 1908821..1909546 | - | 726 | WP_000066560.1 | type 1 fimbria chaperone FimC | - |
| FYK54_RS09200 (1909583) | 1909583..1910122 | - | 540 | WP_000824114.1 | hypothetical protein | VF |
| FYK54_RS09205 (1910187) | 1910187..1910735 | - | 549 | WP_000695557.1 | Transketolase | VF |
| FYK54_RS09210 (1911216) | 1911216..1911812 | - | 597 | WP_000044711.1 | Sporulation inhibitor of replication protein SirA | VF |
| FYK54_RS09215 (1912290) | 1912290..1912892 | - | 603 | WP_000790583.1 | hypothetical protein | VF |
| FYK54_RS09220 (1914348) | 1914348..1915064 | + | 717 | WP_001295734.1 | N-acetylneuraminic acid outer membrane channel NanC | - |
| FYK54_RS09225 (1915084) | 1915084..1916190 | + | 1107 | WP_001309184.1 | N-acetylneuraminate epimerase | - |
| FYK54_RS09230 (1916255) | 1916255..1917235 | + | 981 | WP_000991438.1 | 9-O-acetyl-N-acetylneuraminic acid deacetylase | - |
| FYK54_RS09235 (1917345) | 1917345..1917550 | + | 206 | Protein_1810 | HNH endonuclease | - |
| FYK54_RS09240 (1917818) | 1917818..1919058 | - | 1241 | Protein_1811 | helicase YjhR | - |
| FYK54_RS09245 (1919174) | 1919174..1919305 | + | 132 | WP_001309182.1 | hypothetical protein | - |
| FYK54_RS09250 (1919796) | 1919796..1920053 | + | 258 | WP_001054376.1 | YjhX family toxin | Toxin Detail |
| FYK54_RS09255 (1920065) | 1920065..1920610 | + | 546 | WP_001309181.1 | N-acetyltransferase | Antitoxin Detail |
| FYK54_RS09260 (1920666) | 1920666..1921412 | + | 747 | WP_000354251.1 | class I SAM-dependent methyltransferase | - |
| FYK54_RS09265 (1921581) | 1921581..1921799 | + | 219 | Protein_1816 | hypothetical protein | - |
| FYK54_RS09270 (1921837) | 1921837..1921953 | + | 117 | Protein_1817 | VOC family protein | - |
| FYK54_RS09275 (1922198) | 1922198..1923319 | + | 1122 | WP_000010829.1 | M42 family metallopeptidase | - |
| FYK54_RS09280 (1923316) | 1923316..1923594 | + | 279 | WP_000722973.1 | PTS sugar transporter subunit IIB SgcB | - |
| FYK54_RS09285 (1923606) | 1923606..1924919 | + | 1314 | WP_000460843.1 | PTS sugar transporter subunit IIC SgcC | - |
Similar MGE(s)
Similar MGE(s) is defined as other TA-related MGE(s) with Mash distance < 0.01 to this MGE.
| Detail | Organism | MGE type | Related TA | Genome accession | Coordinates | Mash distance |
|---|---|---|---|---|---|---|
| Escherichia coli str. K-12 substr. MC4100 | Genomic island | TA20089 | HG738867 | 4419085..4430625 | 0.007 | |
| Escherichia coli str. K-12 substr. MG1655 | Genomic island | TA6279 | NC_000913 | 4533239..4545029 | 0.002 | |
| Escherichia coli str. K-12 substr. W3110 | Genomic island | TA21460 | NC_007779 | 4537919..4549709 | 0.002 | |
| Escherichia coli BW2952 | Genomic island | TA23876 | NC_012759 | 4469997..4481537 | 0.007 | |
| Escherichia coli DH1 | Genomic island | TA27426 | NC_017638 | 4513009..4524807 | 0.003 | |
| Escherichia coli BW25113 | Genomic island | TA48705 | NZ_CP009273 | 4523056..4534846 | 0.002 | |
| Escherichia coli str. K-12 substr. W3110 strain K-12 substr. ZK126 | Genomic island | TA68445 | NZ_CP017979 | 4432698..4444488 | 0.002 | |
| Escherichia coli str. K-12 substr. MC4100 strain K-12 | Genomic island | TA285034 | NZ_HG738867 | 4419085..4430625 | 0.007 |