Detailed information of TA system    

insolicoBioinformatically predicted

Overview

TA module


Type II Classification (family/domain) yjhX-yjhQ/YjhX-GNAT
Location 4533239..4534053 Replicon chromosome
Accession NZ_CP026342
Organism Escherichia coli strain 9FA

Toxin (Protein)


Gene name yjhX Uniprot ID S1PA82
Locus tag C2R21_RS23420 Protein ID WP_001054376.1
Coordinates 4533796..4534053 (-) Length 86 a.a.

Antitoxin (Protein)


Gene name yjhQ Uniprot ID U9Z4B8
Locus tag C2R21_RS23415 Protein ID WP_001309181.1
Coordinates 4533239..4533784 (-) Length 182 a.a.

Genomic Context

Locus tag Coordinates Strand Size (bp) Protein ID Product Description
C2R21_RS23390 4528930..4530243 - 1314 WP_000460843.1 galactitol-specific PTS transporter subunit IIC -
C2R21_RS23395 4530255..4530533 - 279 WP_000722973.1 PTS sugar transporter subunit IIB -
C2R21_RS23400 4530530..4531651 - 1122 WP_000010829.1 M42 family metallopeptidase -
C2R21_RS24380 4531896..4532012 - 117 Protein_4264 VOC family protein -
C2R21_RS23405 4532050..4532268 - 219 Protein_4265 hypothetical protein -
C2R21_RS23410 4532437..4533183 - 747 WP_000354251.1 class I SAM-dependent methyltransferase -
C2R21_RS23415 4533239..4533784 - 546 WP_001309181.1 N-acetyltransferase Antitoxin
C2R21_RS23420 4533796..4534053 - 258 WP_001054376.1 hypothetical protein Toxin
C2R21_RS23430 4534430..4534675 - 246 Protein_4269 GNAT family N-acetyltransferase -
C2R21_RS23440 4534791..4536031 + 1241 Protein_4270 helicase YjhR -
C2R21_RS23445 4536614..4537594 - 981 WP_000991438.1 9-O-acetyl-N-acetylneuraminic acid deacetylase -
C2R21_RS23450 4537659..4538765 - 1107 WP_001309184.1 N-acetylneuraminate epimerase -

Associated MGEs

MGE
detail		 Similar
MGEs		 Relative
position		 MGE Type Cargo ARG Virulence gene Coordinates Length (bp)
inside Genomic island - fimB / fimE / fimA / fimI / fimC 4533239..4545029 11790


Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.


Domains

Predicted by InterproScan

Toxin

Putative toxin of bacterial toxin-antitoxin pair

(1-85)

Antitoxin

GNAT domain

(18-121)


Sequences

Toxin        


Download         Length: 86 a.a.        Molecular weight: 9734.29 Da        Isoelectric Point: 11.0090

>T93883 WP_001054376.1 NZ_CP026342:c4534053-4533796 [Escherichia coli]
MNLSRQEQHTLHVLAKGRRIAHVRDSSGRVTSVECYSREGLLLTDCTLAVFKKLKTKKLIKSVNGQPYRINTTELNKVRA
QLDNR

Download         Length: 258 bp

>T93883 NZ_CP026342:c4534053-4533796 [Escherichia coli]
ATGAATTTATCCCGTCAGGAACAACATACCTTACACGTTCTCGCTAAAGGTAGACGTATTGCGCACGTCCGCGATTCTTC
AGGCCGCGTCACTTCCGTTGAATGCTACAGCCGCGAAGGGCTGTTGCTGACCGACTGCACGCTCGCCGTCTTCAAAAAAC
TCAAAACCAAAAAACTTATCAAGTCCGTCAATGGCCAGCCCTATCGAATCAACACCACCGAGCTGAATAAAGTTCGCGCT
CAGCTCGATAATCGCTAA

Antitoxin


Download         Length: 182 a.a.        Molecular weight: 19956.90 Da        Isoelectric Point: 6.3277

>AT93883 WP_001309181.1 NZ_CP026342:c4533784-4533239 [Escherichia coli]
MTVHHFTFHITDKSDASDIREVETRAFGFSKEADLVASLLEDESARPALSLLARYEGKAVGHILFTRATFKGEMDSPLMH
ILAPLAVIPEYQGMGVGGRLIRTGIEHLRLMGCQTVFVLGHATYYPRHGFEPCAGDKGYPAPYPIPEEHKACWMMQSLTA
QPMTLTGHIRCADPDETGALT

Download         Length: 546 bp

>AT93883 NZ_CP026342:c4533784-4533239 [Escherichia coli]
ATGACAGTACACCACTTCACTTTTCATATCACAGATAAAAGTGATGCCAGTGATATCCGGGAAGTCGAAACCCGCGCATT
TGGCTTCAGCAAAGAAGCCGATTTAGTGGCCTCTTTACTTGAGGATGAAAGCGCGCGCCCCGCGTTATCGCTGCTAGCCC
GGTATGAAGGCAAAGCCGTCGGGCATATTTTATTTACCCGGGCAACCTTCAAAGGAGAAATGGATTCACCGTTGATGCAC
ATCCTCGCTCCCCTGGCGGTCATACCGGAATACCAAGGGATGGGCGTGGGAGGACGGTTGATACGCACTGGCATCGAGCA
CCTGAGGTTGATGGGCTGCCAGACGGTTTTTGTTCTCGGCCACGCCACCTATTACCCCCGACATGGGTTCGAACCCTGTG
CCGGAGACAAAGGCTATCCGGCACCTTATCCCATCCCGGAGGAGCACAAAGCCTGCTGGATGATGCAATCACTCACCGCT
CAGCCCATGACCCTGACCGGCCACATCCGGTGCGCAGACCCTGATGAAACCGGAGCACTGACGTGA

Similar Proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
Protein Organism Identities (%) Coverage (%) Ha-value

Structures

Toxin

Source ID Structure
AlphaFold DB S1PA82

Antitoxin

Source ID Structure
AlphaFold DB U9Z4B8

References