MGE detailed information
MGE type: Genomic_island MGE length: 11791 bp
Accession: NZ_CP087136 Location: 4522226..4534016 Organism: Escherichia coli strain JW5503 Replicon: chromosome
Accession: NZ_CP087136 Location: 4522226..4534016 Organism: Escherichia coli strain JW5503 Replicon: chromosome
Gene structure
The 5 kb flanking regions of this MGE are displayed.
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| LOX89_RS21955 (4517917) | 4517917..4519230 | - | 1314 | WP_000460843.1 | PTS sugar transporter subunit IIC SgcC | - |
| LOX89_RS21960 (4519242) | 4519242..4519520 | - | 279 | WP_000722973.1 | PTS sugar transporter subunit IIB SgcB | - |
| LOX89_RS21965 (4519517) | 4519517..4520638 | - | 1122 | WP_000010829.1 | M42 family metallopeptidase | - |
| LOX89_RS21970 (4520883) | 4520883..4520999 | - | 117 | Protein_4296 | VOC family protein | - |
| LOX89_RS21975 (4521037) | 4521037..4521255 | - | 219 | Protein_4297 | hypothetical protein | - |
| LOX89_RS21980 (4521424) | 4521424..4522170 | - | 747 | WP_000354251.1 | class I SAM-dependent methyltransferase | - |
| LOX89_RS21985 (4522226) | 4522226..4522771 | - | 546 | WP_001309181.1 | N-acetyltransferase | Antitoxin Detail |
| LOX89_RS21990 (4522783) | 4522783..4523040 | - | 258 | WP_001054376.1 | YjhX family toxin | Toxin Detail |
| LOX89_RS21995 (4523531) | 4523531..4523662 | - | 132 | WP_001309182.1 | hypothetical protein | - |
| LOX89_RS22000 (4523778) | 4523778..4525018 | + | 1241 | Protein_4302 | helicase YjhR | - |
| LOX89_RS22005 (4525286) | 4525286..4525491 | - | 206 | Protein_4303 | HNH endonuclease | - |
| LOX89_RS22010 (4525601) | 4525601..4526581 | - | 981 | WP_000991438.1 | 9-O-acetyl-N-acetylneuraminic acid deacetylase | - |
| LOX89_RS22015 (4526646) | 4526646..4527752 | - | 1107 | WP_001309184.1 | N-acetylneuraminate epimerase | - |
| LOX89_RS22020 (4527772) | 4527772..4528488 | - | 717 | WP_001295734.1 | N-acetylneuraminic acid outer membrane channel NanC | - |
| LOX89_RS22025 (4529944) | 4529944..4530546 | + | 603 | WP_000790583.1 | Tyrosine recombinase XerC | VF |
| LOX89_RS22030 (4531024) | 4531024..4531620 | + | 597 | WP_235639187.1 | Tyrosine recombinase XerC | VF |
| LOX89_RS22035 (4532102) | 4532102..4532650 | + | 549 | WP_000695564.1 | hypothetical protein | VF |
| LOX89_RS22040 (4532715) | 4532715..4533254 | + | 540 | WP_000824114.1 | hypothetical protein | VF |
| LOX89_RS22045 (4533291) | 4533291..4534016 | + | 726 | WP_000066547.1 | hypothetical protein | VF |
| LOX89_RS22050 (4534083) | 4534083..4536719 | + | 2637 | WP_000121005.1 | fimbrial usher FimD | - |
| LOX89_RS22055 (4536729) | 4536729..4537259 | + | 531 | WP_001244827.1 | type 1 fimbria minor subunit FimF | - |
| LOX89_RS22060 (4537272) | 4537272..4537775 | + | 504 | WP_000870592.1 | type 1 fimbria minor subunit FimG | - |
| LOX89_RS22065 (4537795) | 4537795..4538697 | + | 903 | WP_000832247.1 | type 1 fimbria D-mannose specific adhesin FimH | - |
Similar MGE(s)
Similar MGE(s) is defined as other TA-related MGE(s) with Mash distance < 0.01 to this MGE.
| Detail | Organism | MGE type | Related TA | Genome accession | Coordinates | Mash distance |
|---|---|---|---|---|---|---|
| Escherichia coli str. K-12 substr. MC4100 | Genomic island | TA20089 | HG738867 | 4419085..4430625 | 0.004 | |
| Escherichia coli str. K-12 substr. MG1655 | Genomic island | TA6279 | NC_000913 | 4533239..4545029 | 0 | |
| Escherichia coli str. K-12 substr. W3110 | Genomic island | TA21460 | NC_007779 | 4537919..4549709 | 0 | |
| Escherichia coli BW2952 | Genomic island | TA23876 | NC_012759 | 4469997..4481537 | 0.004 | |
| Escherichia coli DH1 | Genomic island | TA27426 | NC_017638 | 4513009..4524807 | 0 | |
| Escherichia coli BW25113 | Genomic island | TA48705 | NZ_CP009273 | 4523056..4534846 | 0 | |
| Escherichia coli str. K-12 substr. W3110 strain K-12 substr. ZK126 | Genomic island | TA68445 | NZ_CP017979 | 4432698..4444488 | 0 | |
| Escherichia coli str. K-12 substr. MC4100 strain K-12 | Genomic island | TA285034 | NZ_HG738867 | 4419085..4430625 | 0.004 |