MGE detailed information
MGE type: Genomic_island MGE length: 11791 bp
Accession: NZ_CP026612 Location: 1584820..1596610 Organism: Escherichia coli strain DTU-1 Replicon: chromosome
Accession: NZ_CP026612 Location: 1584820..1596610 Organism: Escherichia coli strain DTU-1 Replicon: chromosome
Gene structure
The 5 kb flanking regions of this MGE are displayed.
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| C4J63_RS08080 () | 1580511..1581824 | - | 1314 | WP_000460843.1 | galactitol-specific PTS transporter subunit IIC | - |
| C4J63_RS08085 () | 1581836..1582114 | - | 279 | WP_000722973.1 | PTS sugar transporter subunit IIB | - |
| C4J63_RS08090 () | 1582111..1583232 | - | 1122 | WP_000010829.1 | M42 family metallopeptidase | - |
| C4J63_RS23120 () | 1583477..1583593 | - | 117 | Protein_1459 | VOC family protein | - |
| C4J63_RS08095 () | 1583631..1583849 | - | 219 | Protein_1460 | hypothetical protein | - |
| C4J63_RS08100 () | 1584018..1584764 | - | 747 | WP_000354251.1 | class I SAM-dependent methyltransferase | - |
| C4J63_RS08105 () | 1584820..1585365 | - | 546 | WP_001309181.1 | N-acetyltransferase | Antitoxin Detail |
| C4J63_RS08110 () | 1585377..1585634 | - | 258 | WP_001054376.1 | hypothetical protein | Toxin Detail |
| C4J63_RS08120 () | 1586011..1586256 | - | 246 | Protein_1464 | GNAT family N-acetyltransferase | - |
| C4J63_RS08130 () | 1586372..1587612 | + | 1241 | Protein_1465 | helicase YjhR | - |
| C4J63_RS08135 () | 1588195..1589175 | - | 981 | WP_000991438.1 | 9-O-acetyl-N-acetylneuraminic acid deacetylase | - |
| C4J63_RS08140 () | 1589240..1590346 | - | 1107 | WP_001309184.1 | N-acetylneuraminate epimerase | - |
| C4J63_RS08145 () | 1590366..1591082 | - | 717 | WP_001295734.1 | N-acetylneuraminic acid outer membrane channel NanC | - |
| C4J63_RS08160 () | 1592538..1593140 | + | 603 | WP_000790583.1 | Tyrosine recombinase XerC | VF |
| C4J63_RS08165 () | 1593618..1594214 | + | 597 | WP_000044711.1 | Tyrosine recombinase XerD | VF |
| C4J63_RS08175 () | 1594696..1595244 | + | 549 | WP_000695564.1 | Type-1 fimbrial protein, A chain | VF |
| C4J63_RS08180 () | 1595309..1595848 | + | 540 | WP_000824114.1 | putative major fimbrial subunit LpfA | VF |
| C4J63_RS08185 () | 1595885..1596610 | + | 726 | WP_000066547.1 | Chaperone protein FimC | VF |
| C4J63_RS08190 () | 1596677..1599313 | + | 2637 | WP_000121005.1 | fimbrial usher FimD | - |
| C4J63_RS08195 () | 1599323..1599853 | + | 531 | WP_001244827.1 | type 1 fimbria minor subunit FimF | - |
| C4J63_RS08200 () | 1599866..1600369 | + | 504 | WP_000870592.1 | type 1 fimbria minor subunit FimG | - |
| C4J63_RS08205 () | 1600389..1601291 | + | 903 | WP_000832247.1 | type 1 fimbria D-mannose specific adhesin FimH | - |
Similar MGE(s)
Similar MGE(s) is defined as other TA-related MGE(s) with Mash distance < 0.01 to this MGE.
| Detail | Organism | MGE type | Related TA | Genome accession | Coordinates | Mash distance |
|---|---|---|---|---|---|---|
| Escherichia coli str. K-12 substr. MC4100 | Genomic island | TA20089 | HG738867 | 4419085..4430625 | 0.004 | |
| Escherichia coli str. K-12 substr. MG1655 | Genomic island | TA6279 | NC_000913 | 4533239..4545029 | 0 | |
| Escherichia coli str. K-12 substr. W3110 | Genomic island | TA21460 | NC_007779 | 4537919..4549709 | 0 | |
| Escherichia coli BW2952 | Genomic island | TA23876 | NC_012759 | 4469997..4481537 | 0.004 | |
| Escherichia coli DH1 | Genomic island | TA27426 | NC_017638 | 4513009..4524807 | 0 | |
| Escherichia coli BW25113 | Genomic island | TA48705 | NZ_CP009273 | 4523056..4534846 | 0 | |
| Escherichia coli str. K-12 substr. W3110 strain K-12 substr. ZK126 | Genomic island | TA68445 | NZ_CP017979 | 4432698..4444488 | 0 | |
| Escherichia coli str. K-12 substr. MC4100 strain K-12 | Genomic island | TA285034 | NZ_HG738867 | 4419085..4430625 | 0.004 |