174012

Detailed information of TA system    

insolicoBioinformatically predicted

Overview

TA module


Type II Classification (family/domain) yjhX-yjhQ/YjhX-GNAT
Location 4524259..4525073 Replicon chromosome
Accession NZ_CP062247
Organism Escherichia coli strain AML002_ev03

Toxin (Protein)


Gene name yjhX Uniprot ID S1PA82
Locus tag IHN48_RS21820 Protein ID WP_001054376.1
Coordinates 4524816..4525073 (-) Length 86 a.a.

Antitoxin (Protein)


Gene name yjhQ Uniprot ID U9Z4B8
Locus tag IHN48_RS21815 Protein ID WP_001309181.1
Coordinates 4524259..4524804 (-) Length 182 a.a.

Genomic Context

Locus tag Coordinates Strand Size (bp) Protein ID Product Description
IHN48_RS21785 4519950..4521263 - 1314 WP_000460843.1 galactitol-specific PTS transporter subunit IIC -
IHN48_RS21790 4521275..4521553 - 279 WP_000722973.1 PTS sugar transporter subunit IIB -
IHN48_RS21795 4521550..4522671 - 1122 WP_000010829.1 M42 family metallopeptidase -
IHN48_RS21800 4522916..4523032 - 117 Protein_4241 VOC family protein -
IHN48_RS21805 4523070..4523288 - 219 Protein_4242 hypothetical protein -
IHN48_RS21810 4523457..4524203 - 747 WP_000354251.1 class I SAM-dependent methyltransferase -
IHN48_RS21815 4524259..4524804 - 546 WP_001309181.1 N-acetyltransferase Antitoxin
IHN48_RS21820 4524816..4525073 - 258 WP_001054376.1 hypothetical protein Toxin
IHN48_RS21825 4525450..4525695 - 246 Protein_4246 GNAT family N-acetyltransferase -
IHN48_RS21830 4526065..4527051 + 987 WP_001323209.1 hypothetical protein -
IHN48_RS21835 4527634..4528614 - 981 WP_000991438.1 9-O-acetyl-N-acetylneuraminic acid deacetylase -
IHN48_RS21840 4528679..4529785 - 1107 WP_001309184.1 N-acetylneuraminate epimerase -

Associated MGEs

MGE
detail		 Similar
MGEs		 Relative
position		 MGE Type Cargo ARG Virulence gene Coordinates Length (bp)
inside Genomic island - fimB / fimE / fimA / fimI / fimC 4524259..4536049 11790


Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.


Domains

Predicted by InterproScan

Toxin

Putative toxin of bacterial toxin-antitoxin pair

(1-85)

Antitoxin

GNAT domain

(18-121)


Sequences

Toxin        


Download         Length: 86 a.a.        Molecular weight: 9734.29 Da        Isoelectric Point: 11.0090

>T174012 WP_001054376.1 NZ_CP062247:c4525073-4524816 [Escherichia coli]
MNLSRQEQHTLHVLAKGRRIAHVRDSSGRVTSVECYSREGLLLTDCTLAVFKKLKTKKLIKSVNGQPYRINTTELNKVRA
QLDNR

Download         Length: 258 bp

>T174012 NZ_CP080481:33411-33752 [Vibrio parahaemolyticus]
ATGACGTATGCAGTACCAGAGAAAGGCGATGTAGTAGTAATGAGTTTTAATCCGCAAAGCGGACACGAACAAGCGGGAGA
CAGTCGGCCTGGGCTGGTCATTTCCCCGAAAGAGTTTAACCAAGCAACTGGCTTTGCTCTGGTATGCCCCATAACCAACC
AGTCAAAAGGGTATCCGTTTGAAGTTGAAATAACCGGAAGCCAAAAAACAACGGGTGTGGTGCTGGCTGACCAAGTGAAA
TCCTTGGATTGGCGCGCGCGTCGCGCTCGTGTGGTGGACTCCGTTTCAAACGAAACACTGGGGACTGTGCGGGATTATGT
CACAACGATTGCTAATGGCTGA

Antitoxin


Download         Length: 182 a.a.        Molecular weight: 19956.90 Da        Isoelectric Point: 6.3277

>AT174012 WP_001309181.1 NZ_CP062247:c4524804-4524259 [Escherichia coli]
MTVHHFTFHITDKSDASDIREVETRAFGFSKEADLVASLLEDESARPALSLLARYEGKAVGHILFTRATFKGEMDSPLMH
ILAPLAVIPEYQGMGVGGRLIRTGIEHLRLMGCQTVFVLGHATYYPRHGFEPCAGDKGYPAPYPIPEEHKACWMMQSLTA
QPMTLTGHIRCADPDETGALT

Download         Length: 546 bp

>AT174012 NZ_CP080481:33184-33414 [Vibrio parahaemolyticus]
ATGTCACAAACAATAGCTAAGTGGGGCCACAGCGCAGCTGTGCGTATACCTTCTAAGGTATTGAAAAATATGGATATGGC
GGTGGGTGACAAAGTGGAGGTTAAAGTGTTCAATCGACAAATTATCATTGAACCTGCAAAACCAACACTCGCCCAGCTTT
TGAGTCAGATCACTGATGAAAACCGCCATGATGAAGTAATCACCGAAACTATGGGTAATGAATTGTTATGA

Similar Proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
Protein Organism Identities (%) Coverage (%) Ha-value

Structures

Toxin

Source ID Structure
AlphaFold DB S1PA82

Antitoxin

Source ID Structure
AlphaFold DB U9Z4B8

References