MGE detailed information
MGE type: Genomic_island MGE length: 11028 bp
Accession: NZ_CP023960 Location: 2768858..2779885 Organism: Escherichia coli strain FDAARGOS_448 Replicon: chromosome
Accession: NZ_CP023960 Location: 2768858..2779885 Organism: Escherichia coli strain FDAARGOS_448 Replicon: chromosome
Gene structure
The 5 kb flanking regions of this MGE are displayed.
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| CRN68_RS15465 () | 2764337..2764840 | - | 504 | WP_000870592.1 | type 1 fimbria minor subunit FimG | - |
| CRN68_RS15470 () | 2764853..2765383 | - | 531 | WP_001244827.1 | type 1 fimbria minor subunit FimF | - |
| CRN68_RS15475 () | 2765393..2768029 | - | 2637 | WP_000121002.1 | fimbrial usher FimD | - |
| CRN68_RS15480 () | 2768096..2768821 | - | 726 | WP_000066560.1 | type 1 fimbria chaperone FimC | - |
| CRN68_RS15485 () | 2768858..2769397 | - | 540 | WP_000824114.1 | putative major fimbrial subunit LpfA | VF |
| CRN68_RS15490 () | 2769462..2770010 | - | 549 | WP_000695557.1 | Type-1 fimbrial protein, A chain | VF |
| CRN68_RS15495 () | 2770491..2771087 | - | 597 | WP_000044711.1 | Tyrosine recombinase XerD | VF |
| CRN68_RS15500 () | 2771565..2772167 | - | 603 | WP_000790583.1 | Tyrosine recombinase XerC | VF |
| CRN68_RS15515 () | 2773623..2774339 | + | 717 | WP_001295734.1 | N-acetylneuraminic acid outer membrane channel NanC | - |
| CRN68_RS15520 () | 2774359..2775465 | + | 1107 | WP_001309184.1 | N-acetylneuraminate epimerase | - |
| CRN68_RS15525 () | 2775530..2776510 | + | 981 | WP_000991438.1 | 9-O-acetyl-N-acetylneuraminic acid deacetylase | - |
| CRN68_RS15535 () | 2777093..2778333 | - | 1241 | Protein_2618 | helicase YjhR | - |
| CRN68_RS15545 () | 2778449..2778694 | + | 246 | Protein_2619 | GNAT family N-acetyltransferase | - |
| CRN68_RS15555 () | 2779071..2779328 | + | 258 | WP_001054376.1 | hypothetical protein | Toxin Detail |
| CRN68_RS15560 () | 2779340..2779885 | + | 546 | WP_001309181.1 | N-acetyltransferase | Antitoxin Detail |
| CRN68_RS15565 () | 2779941..2780687 | + | 747 | WP_000354251.1 | class I SAM-dependent methyltransferase | - |
| CRN68_RS15570 () | 2780856..2781074 | + | 219 | Protein_2623 | hypothetical protein | - |
| CRN68_RS29490 () | 2781112..2781228 | + | 117 | Protein_2624 | VOC family protein | - |
| CRN68_RS15580 () | 2781473..2782594 | + | 1122 | WP_000010829.1 | M42 family metallopeptidase | - |
| CRN68_RS15585 () | 2782591..2782869 | + | 279 | WP_000722973.1 | PTS sugar transporter subunit IIB | - |
| CRN68_RS15590 () | 2782881..2784194 | + | 1314 | WP_000460843.1 | galactitol-specific PTS transporter subunit IIC | - |
Similar MGE(s)
Similar MGE(s) is defined as other TA-related MGE(s) with Mash distance < 0.01 to this MGE.
| Detail | Organism | MGE type | Related TA | Genome accession | Coordinates | Mash distance |
|---|---|---|---|---|---|---|
| Escherichia coli str. K-12 substr. MC4100 | Genomic island | TA20089 | HG738867 | 4419085..4430625 | 0.007 | |
| Escherichia coli str. K-12 substr. MG1655 | Genomic island | TA6279 | NC_000913 | 4533239..4545029 | 0.002 | |
| Escherichia coli str. K-12 substr. W3110 | Genomic island | TA21460 | NC_007779 | 4537919..4549709 | 0.002 | |
| Escherichia coli BW2952 | Genomic island | TA23876 | NC_012759 | 4469997..4481537 | 0.007 | |
| Escherichia coli DH1 | Genomic island | TA27426 | NC_017638 | 4513009..4524807 | 0.003 | |
| Escherichia coli BW25113 | Genomic island | TA48705 | NZ_CP009273 | 4523056..4534846 | 0.002 | |
| Escherichia coli str. K-12 substr. W3110 strain K-12 substr. ZK126 | Genomic island | TA68445 | NZ_CP017979 | 4432698..4444488 | 0.002 | |
| Escherichia coli str. K-12 substr. MC4100 strain K-12 | Genomic island | TA285034 | NZ_HG738867 | 4419085..4430625 | 0.007 |