MGE detailed information
MGE type: Genomic_island MGE length: 11791 bp
Accession: NZ_CP122319 Location: 2332634..2344424 Organism: Escherichia coli strain BW25113 Replicon: chromosome
Accession: NZ_CP122319 Location: 2332634..2344424 Organism: Escherichia coli strain BW25113 Replicon: chromosome
Gene structure
The 5 kb flanking regions of this MGE are displayed.
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| QCG47_RS11125 (2328325) | 2328325..2329638 | - | 1314 | WP_000460843.1 | PTS sugar transporter subunit IIC SgcC | - |
| QCG47_RS11130 (2329650) | 2329650..2329928 | - | 279 | WP_000722973.1 | PTS sugar transporter subunit IIB SgcB | - |
| QCG47_RS11135 (2329925) | 2329925..2331046 | - | 1122 | WP_000010829.1 | M42 family metallopeptidase | - |
| QCG47_RS11140 (2331291) | 2331291..2331407 | - | 117 | Protein_2156 | VOC family protein | - |
| QCG47_RS11145 (2331445) | 2331445..2331663 | - | 219 | Protein_2157 | hypothetical protein | - |
| QCG47_RS11150 (2331832) | 2331832..2332578 | - | 747 | WP_000354251.1 | class I SAM-dependent methyltransferase | - |
| QCG47_RS11155 (2332634) | 2332634..2333179 | - | 546 | WP_001309181.1 | N-acetyltransferase | Antitoxin Detail |
| QCG47_RS11160 (2333191) | 2333191..2333448 | - | 258 | WP_001054376.1 | YjhX family toxin | Toxin Detail |
| QCG47_RS11165 (2333939) | 2333939..2334070 | - | 132 | WP_001309182.1 | hypothetical protein | - |
| QCG47_RS11170 (2334186) | 2334186..2335426 | + | 1241 | Protein_2162 | helicase YjhR | - |
| QCG47_RS11175 (2335694) | 2335694..2335899 | - | 206 | Protein_2163 | HNH endonuclease | - |
| QCG47_RS11180 (2336009) | 2336009..2336989 | - | 981 | WP_000991438.1 | 9-O-acetyl-N-acetylneuraminic acid deacetylase | - |
| QCG47_RS11185 (2337054) | 2337054..2338160 | - | 1107 | WP_001309184.1 | N-acetylneuraminate epimerase | - |
| QCG47_RS11190 (2338180) | 2338180..2338896 | - | 717 | WP_001295734.1 | N-acetylneuraminic acid outer membrane channel NanC | - |
| QCG47_RS11195 (2340352) | 2340352..2340954 | + | 603 | WP_000790583.1 | ISKra4 family transposase ISCep1 | VF |
| QCG47_RS11200 (2341432) | 2341432..2342028 | + | 597 | WP_000044711.1 | ISKra4 family transposase ISCep1 | VF |
| QCG47_RS11205 (2342510) | 2342510..2343058 | + | 549 | WP_000695564.1 | Type-1 fimbrial protein, A chain | VF |
| QCG47_RS11210 (2343123) | 2343123..2343662 | + | 540 | WP_000824114.1 | putative major fimbrial subunit LpfA | VF |
| QCG47_RS11215 (2343699) | 2343699..2344424 | + | 726 | WP_000066547.1 | Chaperone protein FimC | VF |
| QCG47_RS11220 (2344491) | 2344491..2347127 | + | 2637 | WP_000121005.1 | fimbrial usher FimD | - |
| QCG47_RS11225 (2347137) | 2347137..2347667 | + | 531 | WP_001244827.1 | type 1 fimbria minor subunit FimF | - |
| QCG47_RS11230 (2347680) | 2347680..2348183 | + | 504 | WP_000870592.1 | type 1 fimbria minor subunit FimG | - |
| QCG47_RS11235 (2348203) | 2348203..2349105 | + | 903 | WP_000832247.1 | type 1 fimbria D-mannose specific adhesin FimH | - |
Similar MGE(s)
Similar MGE(s) is defined as other TA-related MGE(s) with Mash distance < 0.01 to this MGE.
| Detail | Organism | MGE type | Related TA | Genome accession | Coordinates | Mash distance |
|---|---|---|---|---|---|---|
| Escherichia coli str. K-12 substr. MC4100 | Genomic island | TA20089 | HG738867 | 4419085..4430625 | 0.004 | |
| Escherichia coli str. K-12 substr. MG1655 | Genomic island | TA6279 | NC_000913 | 4533239..4545029 | 0 | |
| Escherichia coli str. K-12 substr. W3110 | Genomic island | TA21460 | NC_007779 | 4537919..4549709 | 0 | |
| Escherichia coli BW2952 | Genomic island | TA23876 | NC_012759 | 4469997..4481537 | 0.004 | |
| Escherichia coli DH1 | Genomic island | TA27426 | NC_017638 | 4513009..4524807 | 0 | |
| Escherichia coli BW25113 | Genomic island | TA48705 | NZ_CP009273 | 4523056..4534846 | 0 | |
| Escherichia coli str. K-12 substr. W3110 strain K-12 substr. ZK126 | Genomic island | TA68445 | NZ_CP017979 | 4432698..4444488 | 0 | |
| Escherichia coli str. K-12 substr. MC4100 strain K-12 | Genomic island | TA285034 | NZ_HG738867 | 4419085..4430625 | 0.004 |