MGE detailed information
MGE type: Genomic_island MGE length: 11790 bp
Accession: NZ_CP053251 Location: 1297780..1309569 Organism: Escherichia coli strain SCU-204 Replicon: chromosome
Accession: NZ_CP053251 Location: 1297780..1309569 Organism: Escherichia coli strain SCU-204 Replicon: chromosome
Gene structure
The 5 kb flanking regions of this MGE are displayed.
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| HHJ42_RS06155 () | 1293471..1294784 | - | 1314 | WP_000460843.1 | galactitol-specific PTS transporter subunit IIC | - |
| HHJ42_RS06160 () | 1294796..1295074 | - | 279 | WP_000722973.1 | PTS sugar transporter subunit IIB | - |
| HHJ42_RS06165 () | 1295071..1296192 | - | 1122 | WP_000010829.1 | M42 family metallopeptidase | - |
| HHJ42_RS06170 () | 1296591..1296809 | - | 219 | Protein_1195 | hypothetical protein | - |
| HHJ42_RS06175 () | 1296978..1297724 | - | 747 | WP_000354251.1 | class I SAM-dependent methyltransferase | - |
| HHJ42_RS06180 () | 1297780..1298325 | - | 546 | WP_001540600.1 | N-acetyltransferase | Antitoxin Detail |
| HHJ42_RS06185 () | 1298337..1298594 | - | 258 | WP_001054376.1 | hypothetical protein | Toxin Detail |
| HHJ42_RS06190 () | 1298971..1299216 | - | 246 | Protein_1199 | GNAT family N-acetyltransferase | - |
| HHJ42_RS06195 () | 1299586..1300572 | + | 987 | WP_001323209.1 | hypothetical protein | - |
| HHJ42_RS06200 () | 1301155..1302135 | - | 981 | WP_000991438.1 | 9-O-acetyl-N-acetylneuraminic acid deacetylase | - |
| HHJ42_RS06205 () | 1302200..1303306 | - | 1107 | WP_001774143.1 | N-acetylneuraminate epimerase | - |
| HHJ42_RS06210 () | 1303326..1304042 | - | 717 | WP_001295734.1 | N-acetylneuraminic acid outer membrane channel NanC | - |
| HHJ42_RS06215 () | 1305498..1306100 | + | 603 | WP_000790583.1 | Tyrosine recombinase XerC | VF |
| HHJ42_RS06220 () | 1306578..1307174 | + | 597 | WP_000044711.1 | Tyrosine recombinase XerD | VF |
| HHJ42_RS06225 () | 1307655..1308203 | + | 549 | WP_001774144.1 | Type-1 fimbrial protein, A chain | VF |
| HHJ42_RS06230 () | 1308268..1308807 | + | 540 | WP_000824114.1 | putative major fimbrial subunit LpfA | VF |
| HHJ42_RS06235 () | 1308844..1309569 | + | 726 | WP_000066560.1 | Chaperone protein FimC | VF |
| HHJ42_RS06240 () | 1309636..1312272 | + | 2637 | WP_000121002.1 | fimbrial usher FimD | - |
| HHJ42_RS06245 () | 1312282..1312812 | + | 531 | WP_001244827.1 | type 1 fimbria minor subunit FimF | - |
| HHJ42_RS06250 () | 1312825..1313328 | + | 504 | WP_000870592.1 | type 1 fimbria minor subunit FimG | - |
| HHJ42_RS06255 () | 1313348..1314250 | + | 903 | WP_001774145.1 | type 1 fimbria D-mannose specific adhesin FimH | - |
Similar MGE(s)
Similar MGE(s) is defined as other TA-related MGE(s) with Mash distance < 0.01 to this MGE.
| Detail | Organism | MGE type | Related TA | Genome accession | Coordinates | Mash distance |
|---|---|---|---|---|---|---|
| Escherichia coli str. K-12 substr. MC4100 | Genomic island | TA20089 | HG738867 | 4419085..4430625 | 0.005 | |
| Escherichia coli str. K-12 substr. MG1655 | Genomic island | TA6279 | NC_000913 | 4533239..4545029 | 0.001 | |
| Escherichia coli str. K-12 substr. W3110 | Genomic island | TA21460 | NC_007779 | 4537919..4549709 | 0.001 | |
| Escherichia coli BW2952 | Genomic island | TA23876 | NC_012759 | 4469997..4481537 | 0.005 | |
| Escherichia coli DH1 | Genomic island | TA27426 | NC_017638 | 4513009..4524807 | 0.001 | |
| Escherichia coli BW25113 | Genomic island | TA48705 | NZ_CP009273 | 4523056..4534846 | 0.001 | |
| Escherichia coli str. K-12 substr. W3110 strain K-12 substr. ZK126 | Genomic island | TA68445 | NZ_CP017979 | 4432698..4444488 | 0.001 | |
| Escherichia coli str. K-12 substr. MC4100 strain K-12 | Genomic island | TA285034 | NZ_HG738867 | 4419085..4430625 | 0.005 |