MGE detailed information
MGE type: Genomic_island MGE length: 11791 bp
Accession: NZ_CP034658 Location: 4505130..4516920 Organism: Escherichia coli strain ATCC 98082 Replicon: chromosome
Accession: NZ_CP034658 Location: 4505130..4516920 Organism: Escherichia coli strain ATCC 98082 Replicon: chromosome
Gene structure
The 5 kb flanking regions of this MGE are displayed.
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| EKH78_RS21655 (4500821) | 4500821..4502134 | - | 1314 | WP_000460843.1 | PTS sugar transporter subunit IIC SgcC | - |
| EKH78_RS21660 (4502146) | 4502146..4502424 | - | 279 | WP_000722973.1 | PTS sugar transporter subunit IIB SgcB | - |
| EKH78_RS21665 (4502421) | 4502421..4503542 | - | 1122 | WP_000010829.1 | M42 family metallopeptidase | - |
| EKH78_RS21670 (4503787) | 4503787..4503903 | - | 117 | Protein_4273 | VOC family protein | - |
| EKH78_RS21675 (4503941) | 4503941..4504159 | - | 219 | Protein_4274 | hypothetical protein | - |
| EKH78_RS21680 (4504328) | 4504328..4505074 | - | 747 | WP_000354251.1 | class I SAM-dependent methyltransferase | - |
| EKH78_RS21685 (4505130) | 4505130..4505675 | - | 546 | WP_001309181.1 | N-acetyltransferase | Antitoxin Detail |
| EKH78_RS21690 (4505687) | 4505687..4505944 | - | 258 | WP_001054376.1 | YjhX family toxin | Toxin Detail |
| EKH78_RS24805 (4506435) | 4506435..4506566 | - | 132 | WP_001309182.1 | hypothetical protein | - |
| EKH78_RS21700 (4506682) | 4506682..4507922 | + | 1241 | Protein_4279 | helicase YjhR | - |
| EKH78_RS24810 (4508190) | 4508190..4508395 | - | 206 | Protein_4280 | HNH endonuclease | - |
| EKH78_RS21705 (4508505) | 4508505..4509485 | - | 981 | WP_000991438.1 | 9-O-acetyl-N-acetylneuraminic acid deacetylase | - |
| EKH78_RS21710 (4509550) | 4509550..4510656 | - | 1107 | WP_001309184.1 | N-acetylneuraminate epimerase | - |
| EKH78_RS21715 (4510676) | 4510676..4511392 | - | 717 | WP_001295734.1 | N-acetylneuraminic acid outer membrane channel NanC | - |
| EKH78_RS21720 (4512848) | 4512848..4513450 | + | 603 | WP_000790583.1 | Tyrosine recombinase XerC | VF |
| EKH78_RS21725 (4513928) | 4513928..4514524 | + | 597 | WP_000044711.1 | Tyrosine recombinase XerC | VF |
| EKH78_RS21730 (4515006) | 4515006..4515554 | + | 549 | WP_000695564.1 | hypothetical protein | VF |
| EKH78_RS21735 (4515619) | 4515619..4516158 | + | 540 | WP_000824114.1 | hypothetical protein | VF |
| EKH78_RS21740 (4516195) | 4516195..4516920 | + | 726 | WP_000066547.1 | hypothetical protein | VF |
| EKH78_RS21745 (4516987) | 4516987..4519623 | + | 2637 | WP_000121005.1 | fimbrial usher FimD | - |
| EKH78_RS21750 (4519633) | 4519633..4520163 | + | 531 | WP_001244827.1 | type 1 fimbria minor subunit FimF | - |
| EKH78_RS21755 (4520176) | 4520176..4520679 | + | 504 | WP_000870592.1 | type 1 fimbria minor subunit FimG | - |
| EKH78_RS21760 (4520699) | 4520699..4521601 | + | 903 | WP_000832247.1 | type 1 fimbria D-mannose specific adhesin FimH | - |
Similar MGE(s)
Similar MGE(s) is defined as other TA-related MGE(s) with Mash distance < 0.01 to this MGE.
| Detail | Organism | MGE type | Related TA | Genome accession | Coordinates | Mash distance |
|---|---|---|---|---|---|---|
| Escherichia coli str. K-12 substr. MC4100 | Genomic island | TA20089 | HG738867 | 4419085..4430625 | 0.004 | |
| Escherichia coli str. K-12 substr. MG1655 | Genomic island | TA6279 | NC_000913 | 4533239..4545029 | 0 | |
| Escherichia coli str. K-12 substr. W3110 | Genomic island | TA21460 | NC_007779 | 4537919..4549709 | 0 | |
| Escherichia coli BW2952 | Genomic island | TA23876 | NC_012759 | 4469997..4481537 | 0.004 | |
| Escherichia coli DH1 | Genomic island | TA27426 | NC_017638 | 4513009..4524807 | 0 | |
| Escherichia coli BW25113 | Genomic island | TA48705 | NZ_CP009273 | 4523056..4534846 | 0 | |
| Escherichia coli str. K-12 substr. W3110 strain K-12 substr. ZK126 | Genomic island | TA68445 | NZ_CP017979 | 4432698..4444488 | 0 | |
| Escherichia coli str. K-12 substr. MC4100 strain K-12 | Genomic island | TA285034 | NZ_HG738867 | 4419085..4430625 | 0.004 |