MGE detailed information
MGE type: Genomic_island MGE length: 11028 bp
Accession: NZ_CP086334 Location: 2657763..2668790 Organism: Escherichia coli strain EBJ003 Replicon: chromosome
Accession: NZ_CP086334 Location: 2657763..2668790 Organism: Escherichia coli strain EBJ003 Replicon: chromosome
Gene structure
The 5 kb flanking regions of this MGE are displayed.
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| C5N12_RS12990 (2653242) | 2653242..2653745 | - | 504 | WP_000870592.1 | type 1 fimbria minor subunit FimG | - |
| C5N12_RS12995 (2653758) | 2653758..2654288 | - | 531 | WP_001244827.1 | type 1 fimbria minor subunit FimF | - |
| C5N12_RS13000 (2654298) | 2654298..2656934 | - | 2637 | WP_000121002.1 | fimbrial usher FimD | - |
| C5N12_RS13005 (2657001) | 2657001..2657726 | - | 726 | WP_000066560.1 | type 1 fimbria chaperone FimC | - |
| C5N12_RS13010 (2657763) | 2657763..2658302 | - | 540 | WP_000824114.1 | putative major fimbrial subunit LpfA | VF |
| C5N12_RS13015 (2658367) | 2658367..2658915 | - | 549 | WP_000695557.1 | Type-1 fimbrial protein, A chain | VF |
| C5N12_RS13020 (2659396) | 2659396..2659992 | - | 597 | WP_000044711.1 | Tyrosine recombinase XerD | VF |
| C5N12_RS13025 (2660470) | 2660470..2661072 | - | 603 | WP_000790583.1 | Tyrosine recombinase XerC | VF |
| C5N12_RS13030 (2662528) | 2662528..2663244 | + | 717 | WP_001295734.1 | N-acetylneuraminic acid outer membrane channel NanC | - |
| C5N12_RS13035 (2663264) | 2663264..2664370 | + | 1107 | WP_001309184.1 | N-acetylneuraminate epimerase | - |
| C5N12_RS13040 (2664435) | 2664435..2665415 | + | 981 | WP_000991438.1 | 9-O-acetyl-N-acetylneuraminic acid deacetylase | - |
| C5N12_RS13045 (2665525) | 2665525..2665730 | + | 206 | Protein_2556 | HNH endonuclease | - |
| C5N12_RS13050 (2665998) | 2665998..2667238 | - | 1241 | Protein_2557 | helicase YjhR | - |
| C5N12_RS13055 (2667354) | 2667354..2667485 | + | 132 | WP_001309182.1 | hypothetical protein | - |
| C5N12_RS13060 (2667976) | 2667976..2668233 | + | 258 | WP_001054376.1 | YjhX family toxin | Toxin Detail |
| C5N12_RS13065 (2668245) | 2668245..2668790 | + | 546 | WP_001309181.1 | N-acetyltransferase | Antitoxin Detail |
| C5N12_RS13070 (2668846) | 2668846..2669592 | + | 747 | WP_000354251.1 | class I SAM-dependent methyltransferase | - |
| C5N12_RS13075 (2669761) | 2669761..2669979 | + | 219 | Protein_2562 | hypothetical protein | - |
| C5N12_RS13080 (2670017) | 2670017..2670133 | + | 117 | Protein_2563 | VOC family protein | - |
| C5N12_RS13085 (2670378) | 2670378..2671499 | + | 1122 | WP_000010829.1 | M42 family metallopeptidase | - |
| C5N12_RS13090 (2671496) | 2671496..2671774 | + | 279 | WP_000722973.1 | PTS sugar transporter subunit IIB SgcB | - |
| C5N12_RS13095 (2671786) | 2671786..2673099 | + | 1314 | WP_105313517.1 | PTS sugar transporter subunit IIC SgcC | - |
Similar MGE(s)
Similar MGE(s) is defined as other TA-related MGE(s) with Mash distance < 0.01 to this MGE.
| Detail | Organism | MGE type | Related TA | Genome accession | Coordinates | Mash distance |
|---|---|---|---|---|---|---|
| Escherichia coli str. K-12 substr. MC4100 | Genomic island | TA20089 | HG738867 | 4419085..4430625 | 0.007 | |
| Escherichia coli str. K-12 substr. MG1655 | Genomic island | TA6279 | NC_000913 | 4533239..4545029 | 0.002 | |
| Escherichia coli str. K-12 substr. W3110 | Genomic island | TA21460 | NC_007779 | 4537919..4549709 | 0.002 | |
| Escherichia coli BW2952 | Genomic island | TA23876 | NC_012759 | 4469997..4481537 | 0.007 | |
| Escherichia coli DH1 | Genomic island | TA27426 | NC_017638 | 4513009..4524807 | 0.003 | |
| Escherichia coli BW25113 | Genomic island | TA48705 | NZ_CP009273 | 4523056..4534846 | 0.002 | |
| Escherichia coli str. K-12 substr. W3110 strain K-12 substr. ZK126 | Genomic island | TA68445 | NZ_CP017979 | 4432698..4444488 | 0.002 | |
| Escherichia coli str. K-12 substr. MC4100 strain K-12 | Genomic island | TA285034 | NZ_HG738867 | 4419085..4430625 | 0.007 |