MGE detailed information
MGE type: Genomic_island MGE length: 11791 bp
Accession: NZ_CP060953 Location: 3513272..3525062 Organism: Escherichia coli strain EC8 Replicon: chromosome
Accession: NZ_CP060953 Location: 3513272..3525062 Organism: Escherichia coli strain EC8 Replicon: chromosome
Gene structure
The 5 kb flanking regions of this MGE are displayed.
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| H9195_RS16960 (3508963) | 3508963..3510276 | - | 1314 | WP_000460843.1 | PTS sugar transporter subunit IIC SgcC | - |
| H9195_RS16965 (3510288) | 3510288..3510566 | - | 279 | WP_000722973.1 | PTS sugar transporter subunit IIB SgcB | - |
| H9195_RS16970 (3510563) | 3510563..3511684 | - | 1122 | WP_000010829.1 | M42 family metallopeptidase | - |
| H9195_RS16975 (3511929) | 3511929..3512045 | - | 117 | Protein_3319 | VOC family protein | - |
| H9195_RS16980 (3512083) | 3512083..3512301 | - | 219 | Protein_3320 | hypothetical protein | - |
| H9195_RS16985 (3512470) | 3512470..3513216 | - | 747 | WP_000354251.1 | class I SAM-dependent methyltransferase | - |
| H9195_RS16990 (3513272) | 3513272..3513817 | - | 546 | WP_001540600.1 | N-acetyltransferase | Antitoxin Detail |
| H9195_RS16995 (3513829) | 3513829..3514086 | - | 258 | WP_001054376.1 | YjhX family toxin | Toxin Detail |
| H9195_RS17000 (3514577) | 3514577..3514708 | - | 132 | WP_001309182.1 | hypothetical protein | - |
| H9195_RS17005 (3514824) | 3514824..3516064 | + | 1241 | Protein_3325 | helicase YjhR | - |
| H9195_RS17010 (3516332) | 3516332..3516537 | - | 206 | Protein_3326 | HNH endonuclease | - |
| H9195_RS17015 (3516647) | 3516647..3517627 | - | 981 | WP_000991438.1 | 9-O-acetyl-N-acetylneuraminic acid deacetylase | - |
| H9195_RS17020 (3517692) | 3517692..3518798 | - | 1107 | WP_001774143.1 | N-acetylneuraminate epimerase | - |
| H9195_RS17025 (3518818) | 3518818..3519534 | - | 717 | WP_001295734.1 | N-acetylneuraminic acid outer membrane channel NanC | - |
| H9195_RS17030 (3520990) | 3520990..3521592 | + | 603 | WP_000790583.1 | Tyrosine recombinase XerC | VF |
| H9195_RS17035 (3522070) | 3522070..3522666 | + | 597 | WP_000044711.1 | Tyrosine recombinase XerD | VF |
| H9195_RS17040 (3523148) | 3523148..3523696 | + | 549 | WP_001774144.1 | Type-1 fimbrial protein, A chain | VF |
| H9195_RS17045 (3523761) | 3523761..3524300 | + | 540 | WP_000824114.1 | putative major fimbrial subunit LpfA | VF |
| H9195_RS17050 (3524337) | 3524337..3525062 | + | 726 | WP_000066560.1 | Chaperone protein FimC | VF |
| H9195_RS17055 (3525129) | 3525129..3527765 | + | 2637 | WP_000121002.1 | fimbrial usher FimD | - |
| H9195_RS17060 (3527775) | 3527775..3528305 | + | 531 | WP_001244827.1 | type 1 fimbria minor subunit FimF | - |
| H9195_RS17065 (3528318) | 3528318..3528821 | + | 504 | WP_000870592.1 | type 1 fimbria minor subunit FimG | - |
| H9195_RS17070 (3528841) | 3528841..3529743 | + | 903 | WP_001774145.1 | type 1 fimbria D-mannose specific adhesin FimH | - |
Similar MGE(s)
Similar MGE(s) is defined as other TA-related MGE(s) with Mash distance < 0.01 to this MGE.
| Detail | Organism | MGE type | Related TA | Genome accession | Coordinates | Mash distance |
|---|---|---|---|---|---|---|
| Escherichia coli str. K-12 substr. MC4100 | Genomic island | TA20089 | HG738867 | 4419085..4430625 | 0.005 | |
| Escherichia coli str. K-12 substr. MG1655 | Genomic island | TA6279 | NC_000913 | 4533239..4545029 | 0.001 | |
| Escherichia coli str. K-12 substr. W3110 | Genomic island | TA21460 | NC_007779 | 4537919..4549709 | 0.001 | |
| Escherichia coli BW2952 | Genomic island | TA23876 | NC_012759 | 4469997..4481537 | 0.005 | |
| Escherichia coli DH1 | Genomic island | TA27426 | NC_017638 | 4513009..4524807 | 0.001 | |
| Escherichia coli BW25113 | Genomic island | TA48705 | NZ_CP009273 | 4523056..4534846 | 0.001 | |
| Escherichia coli str. K-12 substr. W3110 strain K-12 substr. ZK126 | Genomic island | TA68445 | NZ_CP017979 | 4432698..4444488 | 0.001 | |
| Escherichia coli str. K-12 substr. MC4100 strain K-12 | Genomic island | TA285034 | NZ_HG738867 | 4419085..4430625 | 0.005 |