MGE detailed information
MGE type: Genomic_island MGE length: 11794 bp
Accession: NZ_CP087287 Location: 584569..596362 Organism: Escherichia coli strain APEC 16-1068 Replicon: chromosome
Accession: NZ_CP087287 Location: 584569..596362 Organism: Escherichia coli strain APEC 16-1068 Replicon: chromosome
Gene structure
The 5 kb flanking regions of this MGE are displayed.
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| LO742_RS02805 (580260) | 580260..581573 | - | 1314 | WP_000460843.1 | PTS sugar transporter subunit IIC SgcC | - |
| LO742_RS02810 (581585) | 581585..581863 | - | 279 | WP_000722973.1 | PTS sugar transporter subunit IIB SgcB | - |
| LO742_RS02815 (581860) | 581860..582981 | - | 1122 | WP_000010832.1 | M42 family metallopeptidase | - |
| LO742_RS02820 (583226) | 583226..583342 | - | 117 | Protein_546 | VOC family protein | - |
| LO742_RS02825 (583380) | 583380..583598 | - | 219 | Protein_547 | hypothetical protein | - |
| LO742_RS02830 (583767) | 583767..584513 | - | 747 | WP_000354251.1 | class I SAM-dependent methyltransferase | - |
| LO742_RS02835 (584569) | 584569..585114 | - | 546 | WP_001350781.1 | N-acetyltransferase | Antitoxin Detail |
| LO742_RS02840 (585126) | 585126..585383 | - | 258 | WP_001054376.1 | YjhX family toxin | Toxin Detail |
| LO742_RS02845 (585874) | 585874..586005 | - | 132 | WP_001309182.1 | hypothetical protein | - |
| LO742_RS02850 (586121) | 586121..587361 | + | 1241 | Protein_552 | helicase YjhR | - |
| LO742_RS02855 (587629) | 587629..587834 | - | 206 | Protein_553 | HNH endonuclease | - |
| LO742_RS02860 (587944) | 587944..588924 | - | 981 | WP_000991438.1 | 9-O-acetyl-N-acetylneuraminic acid deacetylase | - |
| LO742_RS02865 (588989) | 588989..590095 | - | 1107 | WP_001309184.1 | N-acetylneuraminate epimerase | - |
| LO742_RS02870 (590115) | 590115..590831 | - | 717 | WP_001295734.1 | N-acetylneuraminic acid outer membrane channel NanC | - |
| LO742_RS02875 (592287) | 592287..592889 | + | 603 | WP_000790583.1 | hypothetical protein | VF |
| LO742_RS02880 (593370) | 593370..593978 | + | 609 | WP_000044705.1 | hypothetical protein | VF |
| LO742_RS02885 (594448) | 594448..594996 | + | 549 | WP_000695592.1 | hypothetical protein | VF |
| LO742_RS02890 (595061) | 595061..595600 | + | 540 | WP_000824114.1 | hypothetical protein | VF |
| LO742_RS02895 (595637) | 595637..596362 | + | 726 | WP_000066560.1 | hypothetical protein | VF |
| LO742_RS02900 (596429) | 596429..599065 | + | 2637 | WP_000121002.1 | fimbrial usher FimD | - |
| LO742_RS02905 (599075) | 599075..599605 | + | 531 | WP_001244827.1 | type 1 fimbria minor subunit FimF | - |
| LO742_RS02910 (599618) | 599618..600121 | + | 504 | WP_000870592.1 | type 1 fimbria minor subunit FimG | - |
| LO742_RS02915 (600141) | 600141..601043 | + | 903 | WP_000832247.1 | type 1 fimbria D-mannose specific adhesin FimH | - |
Similar MGE(s)
Similar MGE(s) is defined as other TA-related MGE(s) with Mash distance < 0.01 to this MGE.
| Detail | Organism | MGE type | Related TA | Genome accession | Coordinates | Mash distance |
|---|---|---|---|---|---|---|
| Escherichia coli str. K-12 substr. MC4100 | Genomic island | TA20089 | HG738867 | 4419085..4430625 | 0.005 | |
| Escherichia coli str. K-12 substr. MG1655 | Genomic island | TA6279 | NC_000913 | 4533239..4545029 | 0.001 | |
| Escherichia coli str. K-12 substr. W3110 | Genomic island | TA21460 | NC_007779 | 4537919..4549709 | 0.001 | |
| Escherichia coli BW2952 | Genomic island | TA23876 | NC_012759 | 4469997..4481537 | 0.005 | |
| Escherichia coli DH1 | Genomic island | TA27426 | NC_017638 | 4513009..4524807 | 0.001 | |
| Escherichia coli BW25113 | Genomic island | TA48705 | NZ_CP009273 | 4523056..4534846 | 0.001 | |
| Escherichia coli str. K-12 substr. W3110 strain K-12 substr. ZK126 | Genomic island | TA68445 | NZ_CP017979 | 4432698..4444488 | 0.001 | |
| Escherichia coli str. K-12 substr. MC4100 strain K-12 | Genomic island | TA285034 | NZ_HG738867 | 4419085..4430625 | 0.005 |