MGE detailed information
MGE type: Genomic_island MGE length: 12228 bp
Accession: NZ_CP056036 Location: 4523017..4535244 Organism: Escherichia coli strain EC31 Replicon: chromosome
Accession: NZ_CP056036 Location: 4523017..4535244 Organism: Escherichia coli strain EC31 Replicon: chromosome
Gene structure
The 5 kb flanking regions of this MGE are displayed.
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| HUW39_RS21725 (4518496) | 4518496..4518999 | - | 504 | WP_000870585.1 | type 1 fimbria minor subunit FimG | - |
| HUW39_RS21730 (4519012) | 4519012..4519542 | - | 531 | WP_001244827.1 | type 1 fimbria minor subunit FimF | - |
| HUW39_RS21735 (4519552) | 4519552..4522188 | - | 2637 | WP_000121002.1 | fimbrial usher FimD | - |
| HUW39_RS21740 (4522255) | 4522255..4522980 | - | 726 | WP_000066560.1 | type 1 fimbria chaperone FimC | - |
| HUW39_RS21745 (4523017) | 4523017..4523556 | - | 540 | WP_000824114.1 | hypothetical protein | VF |
| HUW39_RS21750 (4523621) | 4523621..4524169 | - | 549 | WP_000695564.1 | hypothetical protein | VF |
| HUW39_RS21755 (4524651) | 4524651..4525247 | - | 597 | WP_000044711.1 | Tyrosine recombinase XerC | VF |
| HUW39_RS21760 (4525725) | 4525725..4526327 | - | 603 | WP_000790583.1 | Tyrosine recombinase XerC | VF |
| HUW39_RS21765 (4527783) | 4527783..4528499 | + | 717 | WP_001295734.1 | N-acetylneuraminic acid outer membrane channel NanC | - |
| HUW39_RS21770 (4528519) | 4528519..4529625 | + | 1107 | WP_001309184.1 | N-acetylneuraminate epimerase | - |
| HUW39_RS21775 (4529690) | 4529690..4530670 | + | 981 | WP_000991438.1 | 9-O-acetyl-N-acetylneuraminic acid deacetylase | - |
| HUW39_RS26445 (4530780) | 4530780..4530985 | + | 206 | Protein_4310 | HNH endonuclease | - |
| HUW39_RS21780 (4531285) | 4531285..4532265 | - | 981 | WP_000019400.1 | IS5 family transposase IS5D | Transposase |
| HUW39_RS21785 (4532452) | 4532452..4533692 | - | 1241 | Protein_4312 | helicase YjhR | - |
| HUW39_RS26450 (4533808) | 4533808..4533939 | + | 132 | WP_001309182.1 | hypothetical protein | - |
| HUW39_RS21795 (4534430) | 4534430..4534687 | + | 258 | WP_001054376.1 | YjhX family toxin | Toxin Detail |
| HUW39_RS21800 (4534699) | 4534699..4535244 | + | 546 | WP_001309181.1 | N-acetyltransferase | Antitoxin Detail |
| HUW39_RS21805 (4535300) | 4535300..4536046 | + | 747 | WP_000354251.1 | class I SAM-dependent methyltransferase | - |
| HUW39_RS21810 (4536215) | 4536215..4536433 | + | 219 | Protein_4317 | hypothetical protein | - |
| HUW39_RS21815 (4536471) | 4536471..4536587 | + | 117 | Protein_4318 | VOC family protein | - |
| HUW39_RS21820 (4536832) | 4536832..4537953 | + | 1122 | WP_000010829.1 | M42 family metallopeptidase | - |
| HUW39_RS21825 (4537950) | 4537950..4538228 | + | 279 | WP_000722973.1 | PTS sugar transporter subunit IIB SgcB | - |
| HUW39_RS21830 (4538240) | 4538240..4539553 | + | 1314 | WP_000460843.1 | PTS sugar transporter subunit IIC SgcC | - |
Similar MGE(s)
Similar MGE(s) is defined as other TA-related MGE(s) with Mash distance < 0.01 to this MGE.
| Detail | Organism | MGE type | Related TA | Genome accession | Coordinates | Mash distance |
|---|---|---|---|---|---|---|
| Escherichia coli str. K-12 substr. MC4100 | Genomic island | TA20089 | HG738867 | 4419085..4430625 | 0.009 | |
| Escherichia coli str. K-12 substr. MG1655 | Genomic island | TA6279 | NC_000913 | 4533239..4545029 | 0.004 | |
| Escherichia coli str. K-12 substr. W3110 | Genomic island | TA21460 | NC_007779 | 4537919..4549709 | 0.004 | |
| Escherichia coli BW2952 | Genomic island | TA23876 | NC_012759 | 4469997..4481537 | 0.009 | |
| Escherichia coli DH1 | Genomic island | TA27426 | NC_017638 | 4513009..4524807 | 0.005 | |
| Escherichia coli BW25113 | Genomic island | TA48705 | NZ_CP009273 | 4523056..4534846 | 0.004 | |
| Escherichia coli str. K-12 substr. W3110 strain K-12 substr. ZK126 | Genomic island | TA68445 | NZ_CP017979 | 4432698..4444488 | 0.004 | |
| Escherichia coli str. K-12 substr. MC4100 strain K-12 | Genomic island | TA285034 | NZ_HG738867 | 4419085..4430625 | 0.009 |