MGE detailed information
MGE type: Genomic_island MGE length: 11791 bp
Accession: NZ_CP076344 Location: 574038..585828 Organism: Escherichia coli strain AVS0096 Replicon: chromosome
Accession: NZ_CP076344 Location: 574038..585828 Organism: Escherichia coli strain AVS0096 Replicon: chromosome
Gene structure
The 5 kb flanking regions of this MGE are displayed.
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| KM937_RS02720 (569729) | 569729..571042 | - | 1314 | WP_000460843.1 | PTS sugar transporter subunit IIC SgcC | - |
| KM937_RS02725 (571054) | 571054..571332 | - | 279 | WP_000722973.1 | PTS sugar transporter subunit IIB SgcB | - |
| KM937_RS02730 (571329) | 571329..572450 | - | 1122 | WP_000010829.1 | M42 family metallopeptidase | - |
| KM937_RS02735 (572695) | 572695..572811 | - | 117 | Protein_531 | VOC family protein | - |
| KM937_RS02740 (572849) | 572849..573067 | - | 219 | Protein_532 | hypothetical protein | - |
| KM937_RS02745 (573236) | 573236..573982 | - | 747 | WP_000354251.1 | class I SAM-dependent methyltransferase | - |
| KM937_RS02750 (574038) | 574038..574583 | - | 546 | WP_001540600.1 | N-acetyltransferase | Antitoxin Detail |
| KM937_RS02755 (574595) | 574595..574852 | - | 258 | WP_001054376.1 | YjhX family toxin | Toxin Detail |
| KM937_RS24720 (575343) | 575343..575474 | - | 132 | WP_001309182.1 | hypothetical protein | - |
| KM937_RS02765 (575590) | 575590..576830 | + | 1241 | Protein_537 | helicase YjhR | - |
| KM937_RS24725 (577098) | 577098..577303 | - | 206 | Protein_538 | HNH endonuclease | - |
| KM937_RS02770 (577413) | 577413..578393 | - | 981 | WP_000991438.1 | 9-O-acetyl-N-acetylneuraminic acid deacetylase | - |
| KM937_RS02775 (578458) | 578458..579564 | - | 1107 | WP_001774143.1 | N-acetylneuraminate epimerase | - |
| KM937_RS02780 (579584) | 579584..580300 | - | 717 | WP_001295734.1 | N-acetylneuraminic acid outer membrane channel NanC | - |
| KM937_RS02785 (581756) | 581756..582358 | + | 603 | WP_000790583.1 | Tyrosine recombinase XerC | VF |
| KM937_RS02790 (582836) | 582836..583432 | + | 597 | WP_000044711.1 | Tyrosine recombinase XerD | VF |
| KM937_RS02795 (583914) | 583914..584462 | + | 549 | WP_001774144.1 | Type-1 fimbrial protein, A chain | VF |
| KM937_RS02800 (584527) | 584527..585066 | + | 540 | WP_000824114.1 | putative major fimbrial subunit LpfA | VF |
| KM937_RS02805 (585103) | 585103..585828 | + | 726 | WP_000066560.1 | Chaperone protein FimC | VF |
| KM937_RS02810 (585895) | 585895..588531 | + | 2637 | WP_000121002.1 | fimbrial usher FimD | - |
| KM937_RS02815 (588541) | 588541..589071 | + | 531 | WP_001244827.1 | type 1 fimbria minor subunit FimF | - |
| KM937_RS02820 (589084) | 589084..589587 | + | 504 | WP_000870592.1 | type 1 fimbria minor subunit FimG | - |
| KM937_RS02825 (589607) | 589607..590509 | + | 903 | WP_001774145.1 | type 1 fimbria D-mannose specific adhesin FimH | - |
Similar MGE(s)
Similar MGE(s) is defined as other TA-related MGE(s) with Mash distance < 0.01 to this MGE.
| Detail | Organism | MGE type | Related TA | Genome accession | Coordinates | Mash distance |
|---|---|---|---|---|---|---|
| Escherichia coli str. K-12 substr. MC4100 | Genomic island | TA20089 | HG738867 | 4419085..4430625 | 0.005 | |
| Escherichia coli str. K-12 substr. MG1655 | Genomic island | TA6279 | NC_000913 | 4533239..4545029 | 0.001 | |
| Escherichia coli str. K-12 substr. W3110 | Genomic island | TA21460 | NC_007779 | 4537919..4549709 | 0.001 | |
| Escherichia coli BW2952 | Genomic island | TA23876 | NC_012759 | 4469997..4481537 | 0.005 | |
| Escherichia coli DH1 | Genomic island | TA27426 | NC_017638 | 4513009..4524807 | 0.001 | |
| Escherichia coli BW25113 | Genomic island | TA48705 | NZ_CP009273 | 4523056..4534846 | 0.001 | |
| Escherichia coli str. K-12 substr. W3110 strain K-12 substr. ZK126 | Genomic island | TA68445 | NZ_CP017979 | 4432698..4444488 | 0.001 | |
| Escherichia coli str. K-12 substr. MC4100 strain K-12 | Genomic island | TA285034 | NZ_HG738867 | 4419085..4430625 | 0.005 |