MGE detailed information
MGE type: Genomic_island MGE length: 11792 bp
Accession: NZ_CP050998 Location: 2308242..2320033 Organism: Escherichia coli O39:NM str. F8704-2 Replicon: chromosome
Accession: NZ_CP050998 Location: 2308242..2320033 Organism: Escherichia coli O39:NM str. F8704-2 Replicon: chromosome
Gene structure
The 5 kb flanking regions of this MGE are displayed.
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| P411_RS11965 (2303561) | 2303561..2304463 | - | 903 | WP_001338195.1 | type 1 fimbria D-mannose specific adhesin FimH | - |
| P411_RS11970 (2304483) | 2304483..2304986 | - | 504 | WP_000870588.1 | type 1 fimbria minor subunit FimG | - |
| P411_RS11975 (2304999) | 2304999..2305529 | - | 531 | WP_001244823.1 | type 1 fimbria minor subunit FimF | - |
| P411_RS11980 (2305539) | 2305539..2308175 | - | 2637 | WP_000120948.1 | fimbrial usher FimD | - |
| P411_RS11985 (2308242) | 2308242..2308967 | - | 726 | WP_000066568.1 | hypothetical protein | VF |
| P411_RS11990 (2309004) | 2309004..2309543 | - | 540 | WP_000824114.1 | hypothetical protein | VF |
| P411_RS11995 (2309608) | 2309608..2310162 | - | 555 | WP_000695590.1 | hypothetical protein | VF |
| P411_RS12000 (2310643) | 2310643..2311239 | - | 597 | WP_000044711.1 | hypothetical protein | VF |
| P411_RS12005 (2311716) | 2311716..2312318 | - | 603 | WP_000790583.1 | hypothetical protein | VF |
| P411_RS12010 (2313771) | 2313771..2314487 | + | 717 | WP_001295734.1 | N-acetylneuraminic acid outer membrane channel NanC | - |
| P411_RS12015 (2314507) | 2314507..2315613 | + | 1107 | WP_001299704.1 | N-acetylneuraminate epimerase | - |
| P411_RS12020 (2315678) | 2315678..2316658 | + | 981 | WP_000991455.1 | sialate O-acetylesterase | - |
| P411_RS28340 (2316768) | 2316768..2316973 | + | 206 | Protein_2289 | HNH endonuclease | - |
| P411_RS12025 (2317241) | 2317241..2318481 | - | 1241 | Protein_2290 | helicase YjhR | - |
| P411_RS28345 (2318597) | 2318597..2318728 | + | 132 | WP_001309182.1 | hypothetical protein | - |
| P411_RS12035 (2319219) | 2319219..2319476 | + | 258 | WP_001054376.1 | YjhX family toxin | Toxin Detail |
| P411_RS12040 (2319488) | 2319488..2320033 | + | 546 | WP_001338189.1 | N-acetyltransferase | Antitoxin Detail |
| P411_RS12045 (2320089) | 2320089..2320835 | + | 747 | WP_000354251.1 | class I SAM-dependent methyltransferase | - |
| P411_RS12050 (2321004) | 2321004..2321222 | + | 219 | Protein_2295 | hypothetical protein | - |
| P411_RS12055 (2321260) | 2321260..2321376 | + | 117 | Protein_2296 | VOC family protein | - |
| P411_RS12060 (2321621) | 2321621..2322742 | + | 1122 | WP_000010829.1 | M42 family metallopeptidase | - |
| P411_RS12065 (2322739) | 2322739..2323017 | + | 279 | WP_000722973.1 | PTS sugar transporter subunit IIB SgcB | - |
| P411_RS12070 (2323029) | 2323029..2324342 | + | 1314 | WP_000460843.1 | PTS sugar transporter subunit IIC SgcC | - |
Similar MGE(s)
Similar MGE(s) is defined as other TA-related MGE(s) with Mash distance < 0.01 to this MGE.
| Detail | Organism | MGE type | Related TA | Genome accession | Coordinates | Mash distance |
|---|---|---|---|---|---|---|
| Escherichia coli str. K-12 substr. MG1655 | Genomic island | TA6279 | NC_000913 | 4533239..4545029 | 0.009 | |
| Escherichia coli str. K-12 substr. W3110 | Genomic island | TA21460 | NC_007779 | 4537919..4549709 | 0.009 | |
| Escherichia coli DH1 | Genomic island | TA27426 | NC_017638 | 4513009..4524807 | 0.01 | |
| Escherichia coli BW25113 | Genomic island | TA48705 | NZ_CP009273 | 4523056..4534846 | 0.009 | |
| Escherichia coli str. K-12 substr. W3110 strain K-12 substr. ZK126 | Genomic island | TA68445 | NZ_CP017979 | 4432698..4444488 | 0.01 |