MGE detailed information
MGE type: Genomic_island MGE length: 12228 bp
Accession: NZ_CP053662 Location: 4500016..4512243 Organism: Escherichia coli strain eco-241 Replicon: chromosome
Accession: NZ_CP053662 Location: 4500016..4512243 Organism: Escherichia coli strain eco-241 Replicon: chromosome
Gene structure
The 5 kb flanking regions of this MGE are displayed.
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| HPK14_RS21985 (4495495) | 4495495..4495998 | - | 504 | WP_000870585.1 | type 1 fimbria minor subunit FimG | - |
| HPK14_RS21990 (4496011) | 4496011..4496541 | - | 531 | WP_001244827.1 | type 1 fimbria minor subunit FimF | - |
| HPK14_RS21995 (4496551) | 4496551..4499187 | - | 2637 | WP_000121002.1 | fimbrial usher FimD | - |
| HPK14_RS22000 (4499254) | 4499254..4499979 | - | 726 | WP_000066560.1 | type 1 fimbria chaperone FimC | - |
| HPK14_RS22005 (4500016) | 4500016..4500555 | - | 540 | WP_000824114.1 | hypothetical protein | VF |
| HPK14_RS22010 (4500620) | 4500620..4501168 | - | 549 | WP_000695564.1 | hypothetical protein | VF |
| HPK14_RS22015 (4501650) | 4501650..4502246 | - | 597 | WP_000044711.1 | Tyrosine recombinase XerC | VF |
| HPK14_RS22020 (4502724) | 4502724..4503326 | - | 603 | WP_000790583.1 | Tyrosine recombinase XerC | VF |
| HPK14_RS22025 (4504782) | 4504782..4505498 | + | 717 | WP_001295734.1 | N-acetylneuraminic acid outer membrane channel NanC | - |
| HPK14_RS22030 (4505518) | 4505518..4506624 | + | 1107 | WP_001309184.1 | N-acetylneuraminate epimerase | - |
| HPK14_RS22035 (4506689) | 4506689..4507669 | + | 981 | WP_000991438.1 | 9-O-acetyl-N-acetylneuraminic acid deacetylase | - |
| HPK14_RS22040 (4507779) | 4507779..4507984 | + | 206 | Protein_4316 | HNH endonuclease | - |
| HPK14_RS22045 (4508284) | 4508284..4509264 | - | 981 | WP_000019400.1 | IS5 family transposase IS5D | Transposase |
| HPK14_RS22050 (4509451) | 4509451..4510691 | - | 1241 | Protein_4318 | helicase YjhR | - |
| HPK14_RS22055 (4510807) | 4510807..4510938 | + | 132 | WP_001309182.1 | hypothetical protein | - |
| HPK14_RS22060 (4511429) | 4511429..4511686 | + | 258 | WP_001054376.1 | YjhX family toxin | Toxin Detail |
| HPK14_RS22065 (4511698) | 4511698..4512243 | + | 546 | WP_001309181.1 | N-acetyltransferase | Antitoxin Detail |
| HPK14_RS22070 (4512299) | 4512299..4513045 | + | 747 | WP_000354251.1 | class I SAM-dependent methyltransferase | - |
| HPK14_RS22075 (4513214) | 4513214..4513432 | + | 219 | Protein_4323 | hypothetical protein | - |
| HPK14_RS22080 (4513470) | 4513470..4513586 | + | 117 | Protein_4324 | VOC family protein | - |
| HPK14_RS22085 (4513831) | 4513831..4514952 | + | 1122 | WP_000010829.1 | M42 family metallopeptidase | - |
| HPK14_RS22090 (4514949) | 4514949..4515227 | + | 279 | WP_000722973.1 | PTS sugar transporter subunit IIB SgcB | - |
| HPK14_RS22095 (4515239) | 4515239..4516552 | + | 1314 | WP_000460843.1 | PTS sugar transporter subunit IIC SgcC | - |
Similar MGE(s)
Similar MGE(s) is defined as other TA-related MGE(s) with Mash distance < 0.01 to this MGE.
| Detail | Organism | MGE type | Related TA | Genome accession | Coordinates | Mash distance |
|---|---|---|---|---|---|---|
| Escherichia coli str. K-12 substr. MC4100 | Genomic island | TA20089 | HG738867 | 4419085..4430625 | 0.009 | |
| Escherichia coli str. K-12 substr. MG1655 | Genomic island | TA6279 | NC_000913 | 4533239..4545029 | 0.004 | |
| Escherichia coli str. K-12 substr. W3110 | Genomic island | TA21460 | NC_007779 | 4537919..4549709 | 0.004 | |
| Escherichia coli BW2952 | Genomic island | TA23876 | NC_012759 | 4469997..4481537 | 0.009 | |
| Escherichia coli DH1 | Genomic island | TA27426 | NC_017638 | 4513009..4524807 | 0.005 | |
| Escherichia coli BW25113 | Genomic island | TA48705 | NZ_CP009273 | 4523056..4534846 | 0.004 | |
| Escherichia coli str. K-12 substr. W3110 strain K-12 substr. ZK126 | Genomic island | TA68445 | NZ_CP017979 | 4432698..4444488 | 0.004 | |
| Escherichia coli str. K-12 substr. MC4100 strain K-12 | Genomic island | TA285034 | NZ_HG738867 | 4419085..4430625 | 0.009 |