MGE detailed information
MGE type: Genomic_island MGE length: 11791 bp
Accession: NZ_CP011342 Location: 4513929..4525719 Organism: Escherichia coli K-12 substr. GM4792 Replicon: chromosome
Accession: NZ_CP011342 Location: 4513929..4525719 Organism: Escherichia coli K-12 substr. GM4792 Replicon: chromosome
Gene structure
The 5 kb flanking regions of this MGE are displayed.
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| U068_RS22290 () | 4509620..4510933 | - | 1314 | WP_000460843.1 | galactitol-specific PTS transporter subunit IIC | - |
| U068_RS22295 () | 4510945..4511223 | - | 279 | WP_000722973.1 | PTS sugar transporter subunit IIB | - |
| U068_RS22300 () | 4511220..4512341 | - | 1122 | WP_000010829.1 | M42 family metallopeptidase | - |
| U068_RS25920 () | 4512586..4512702 | - | 117 | Protein_4241 | VOC family protein | - |
| U068_RS25120 () | 4512740..4512958 | - | 219 | Protein_4242 | hypothetical protein | - |
| U068_RS22305 () | 4513127..4513873 | - | 747 | WP_000354251.1 | class I SAM-dependent methyltransferase | - |
| U068_RS22310 () | 4513929..4514474 | - | 546 | WP_001309181.1 | N-acetyltransferase | Antitoxin Detail |
| U068_RS22315 () | 4514486..4514743 | - | 258 | WP_001054376.1 | hypothetical protein | Toxin Detail |
| U068_RS25565 () | 4515120..4515365 | - | 246 | Protein_4246 | GNAT family N-acetyltransferase | - |
| U068_RS22330 () | 4515481..4516721 | + | 1241 | Protein_4247 | helicase YjhR | - |
| U068_RS22335 () | 4517304..4518284 | - | 981 | WP_000991438.1 | 9-O-acetyl-N-acetylneuraminic acid deacetylase | - |
| U068_RS22340 () | 4518349..4519455 | - | 1107 | WP_001309184.1 | N-acetylneuraminate epimerase | - |
| U068_RS22345 () | 4519475..4520191 | - | 717 | WP_001295734.1 | N-acetylneuraminic acid outer membrane channel NanC | - |
| U068_RS22360 () | 4521647..4522249 | + | 603 | WP_000790583.1 | Tyrosine recombinase XerC | VF |
| U068_RS22365 () | 4522727..4523323 | + | 597 | WP_000044711.1 | Tyrosine recombinase XerD | VF |
| U068_RS22375 () | 4523805..4524353 | + | 549 | WP_000695564.1 | Type-1 fimbrial protein, A chain | VF |
| U068_RS22380 () | 4524418..4524957 | + | 540 | WP_000824114.1 | putative major fimbrial subunit LpfA | VF |
| U068_RS22385 () | 4524994..4525719 | + | 726 | WP_000066547.1 | Chaperone protein FimC | VF |
| U068_RS22390 () | 4525786..4528422 | + | 2637 | WP_000121005.1 | fimbrial usher FimD | - |
| U068_RS22395 () | 4528432..4528962 | + | 531 | WP_001244827.1 | type 1 fimbria minor subunit FimF | - |
| U068_RS22400 () | 4528975..4529478 | + | 504 | WP_000870592.1 | type 1 fimbria minor subunit FimG | - |
| U068_RS22405 () | 4529498..4530400 | + | 903 | WP_000832247.1 | type 1 fimbria D-mannose specific adhesin FimH | - |
Similar MGE(s)
Similar MGE(s) is defined as other TA-related MGE(s) with Mash distance < 0.01 to this MGE.
| Detail | Organism | MGE type | Related TA | Genome accession | Coordinates | Mash distance |
|---|---|---|---|---|---|---|
| Escherichia coli str. K-12 substr. MC4100 | Genomic island | TA20089 | HG738867 | 4419085..4430625 | 0.004 | |
| Escherichia coli str. K-12 substr. MG1655 | Genomic island | TA6279 | NC_000913 | 4533239..4545029 | 0 | |
| Escherichia coli str. K-12 substr. W3110 | Genomic island | TA21460 | NC_007779 | 4537919..4549709 | 0 | |
| Escherichia coli BW2952 | Genomic island | TA23876 | NC_012759 | 4469997..4481537 | 0.004 | |
| Escherichia coli DH1 | Genomic island | TA27426 | NC_017638 | 4513009..4524807 | 0 | |
| Escherichia coli BW25113 | Genomic island | TA48705 | NZ_CP009273 | 4523056..4534846 | 0 | |
| Escherichia coli str. K-12 substr. W3110 strain K-12 substr. ZK126 | Genomic island | TA68445 | NZ_CP017979 | 4432698..4444488 | 0 | |
| Escherichia coli str. K-12 substr. MC4100 strain K-12 | Genomic island | TA285034 | NZ_HG738867 | 4419085..4430625 | 0.004 |