MGE detailed information
MGE type: Genomic_island MGE length: 12228 bp
Accession: NZ_CP070007 Location: 1102912..1115139 Organism: Escherichia coli strain FDAARGOS_1288 Replicon: chromosome
Accession: NZ_CP070007 Location: 1102912..1115139 Organism: Escherichia coli strain FDAARGOS_1288 Replicon: chromosome
Gene structure
The 5 kb flanking regions of this MGE are displayed.
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| I6K18_RS05375 (1098391) | 1098391..1098894 | - | 504 | WP_000870585.1 | type 1 fimbria minor subunit FimG | - |
| I6K18_RS05380 (1098907) | 1098907..1099437 | - | 531 | WP_001244827.1 | type 1 fimbria minor subunit FimF | - |
| I6K18_RS05385 (1099447) | 1099447..1102083 | - | 2637 | WP_000121002.1 | fimbrial usher FimD | - |
| I6K18_RS05390 (1102150) | 1102150..1102875 | - | 726 | WP_000066560.1 | type 1 fimbria chaperone FimC | - |
| I6K18_RS05395 (1102912) | 1102912..1103451 | - | 540 | WP_000824114.1 | putative major fimbrial subunit LpfA | VF |
| I6K18_RS05400 (1103516) | 1103516..1104064 | - | 549 | WP_000695564.1 | Type-1 fimbrial protein, A chain | VF |
| I6K18_RS05405 (1104546) | 1104546..1105142 | - | 597 | WP_000044711.1 | Tyrosine recombinase XerD | VF |
| I6K18_RS05410 (1105620) | 1105620..1106222 | - | 603 | WP_000790583.1 | Tyrosine recombinase XerC | VF |
| I6K18_RS05415 (1107678) | 1107678..1108394 | + | 717 | WP_001295734.1 | N-acetylneuraminic acid outer membrane channel NanC | - |
| I6K18_RS05420 (1108414) | 1108414..1109520 | + | 1107 | WP_001309184.1 | N-acetylneuraminate epimerase | - |
| I6K18_RS05425 (1109585) | 1109585..1110565 | + | 981 | WP_000991438.1 | 9-O-acetyl-N-acetylneuraminic acid deacetylase | - |
| I6K18_RS28240 (1110675) | 1110675..1110880 | + | 206 | Protein_1061 | HNH endonuclease | - |
| I6K18_RS05430 (1111180) | 1111180..1112160 | - | 981 | WP_000019400.1 | IS5 family transposase IS5D | Transposase |
| I6K18_RS05435 (1112347) | 1112347..1113587 | - | 1241 | Protein_1063 | helicase YjhR | - |
| I6K18_RS28245 (1113703) | 1113703..1113834 | + | 132 | WP_001309182.1 | hypothetical protein | - |
| I6K18_RS05445 (1114325) | 1114325..1114582 | + | 258 | WP_001054376.1 | YjhX family toxin | Toxin Detail |
| I6K18_RS05450 (1114594) | 1114594..1115139 | + | 546 | WP_001309181.1 | N-acetyltransferase | Antitoxin Detail |
| I6K18_RS05455 (1115195) | 1115195..1115941 | + | 747 | WP_000354251.1 | class I SAM-dependent methyltransferase | - |
| I6K18_RS05460 (1116110) | 1116110..1116328 | + | 219 | Protein_1068 | hypothetical protein | - |
| I6K18_RS05465 (1116366) | 1116366..1116482 | + | 117 | Protein_1069 | VOC family protein | - |
| I6K18_RS05470 (1116727) | 1116727..1117848 | + | 1122 | WP_000010829.1 | M42 family metallopeptidase | - |
| I6K18_RS05475 (1117845) | 1117845..1118123 | + | 279 | WP_000722973.1 | PTS sugar transporter subunit IIB SgcB | - |
| I6K18_RS05480 (1118135) | 1118135..1119448 | + | 1314 | WP_000460843.1 | PTS sugar transporter subunit IIC SgcC | - |
Similar MGE(s)
Similar MGE(s) is defined as other TA-related MGE(s) with Mash distance < 0.01 to this MGE.
| Detail | Organism | MGE type | Related TA | Genome accession | Coordinates | Mash distance |
|---|---|---|---|---|---|---|
| Escherichia coli str. K-12 substr. MC4100 | Genomic island | TA20089 | HG738867 | 4419085..4430625 | 0.009 | |
| Escherichia coli str. K-12 substr. MG1655 | Genomic island | TA6279 | NC_000913 | 4533239..4545029 | 0.004 | |
| Escherichia coli str. K-12 substr. W3110 | Genomic island | TA21460 | NC_007779 | 4537919..4549709 | 0.004 | |
| Escherichia coli BW2952 | Genomic island | TA23876 | NC_012759 | 4469997..4481537 | 0.009 | |
| Escherichia coli DH1 | Genomic island | TA27426 | NC_017638 | 4513009..4524807 | 0.005 | |
| Escherichia coli BW25113 | Genomic island | TA48705 | NZ_CP009273 | 4523056..4534846 | 0.004 | |
| Escherichia coli str. K-12 substr. W3110 strain K-12 substr. ZK126 | Genomic island | TA68445 | NZ_CP017979 | 4432698..4444488 | 0.004 | |
| Escherichia coli str. K-12 substr. MC4100 strain K-12 | Genomic island | TA285034 | NZ_HG738867 | 4419085..4430625 | 0.009 |