MGE detailed information
MGE type: Genomic_island MGE length: 11791 bp
Accession: NZ_CP011320 Location: 4525048..4536838 Organism: Escherichia coli strain SQ37 Replicon: chromosome
Accession: NZ_CP011320 Location: 4525048..4536838 Organism: Escherichia coli strain SQ37 Replicon: chromosome
Gene structure
The 5 kb flanking regions of this MGE are displayed.
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| SG48_RS22335 () | 4520739..4522052 | - | 1314 | WP_000460843.1 | galactitol-specific PTS transporter subunit IIC | - |
| SG48_RS22340 () | 4522064..4522342 | - | 279 | WP_000722973.1 | PTS sugar transporter subunit IIB | - |
| SG48_RS22345 () | 4522339..4523460 | - | 1122 | WP_000010829.1 | M42 family metallopeptidase | - |
| SG48_RS25970 () | 4523705..4523821 | - | 117 | Protein_4239 | VOC family protein | - |
| SG48_RS25330 () | 4523859..4524077 | - | 219 | Protein_4240 | hypothetical protein | - |
| SG48_RS22350 () | 4524246..4524992 | - | 747 | WP_000354251.1 | class I SAM-dependent methyltransferase | - |
| SG48_RS22355 () | 4525048..4525593 | - | 546 | WP_001309181.1 | N-acetyltransferase | Antitoxin Detail |
| SG48_RS22360 () | 4525605..4525862 | - | 258 | WP_001054376.1 | hypothetical protein | Toxin Detail |
| SG48_RS25780 () | 4526239..4526484 | - | 246 | Protein_4244 | GNAT family N-acetyltransferase | - |
| SG48_RS22375 () | 4526600..4527840 | + | 1241 | Protein_4245 | helicase YjhR | - |
| SG48_RS22380 () | 4528423..4529403 | - | 981 | WP_000991438.1 | 9-O-acetyl-N-acetylneuraminic acid deacetylase | - |
| SG48_RS22385 () | 4529468..4530574 | - | 1107 | WP_001309184.1 | N-acetylneuraminate epimerase | - |
| SG48_RS22390 () | 4530594..4531310 | - | 717 | WP_001295734.1 | N-acetylneuraminic acid outer membrane channel NanC | - |
| SG48_RS22405 () | 4532766..4533368 | + | 603 | WP_000790583.1 | Tyrosine recombinase XerC | VF |
| SG48_RS22410 () | 4533846..4534442 | + | 597 | WP_000044711.1 | Tyrosine recombinase XerD | VF |
| SG48_RS22420 () | 4534924..4535472 | + | 549 | WP_000695564.1 | Type-1 fimbrial protein, A chain | VF |
| SG48_RS22425 () | 4535537..4536076 | + | 540 | WP_000824114.1 | putative major fimbrial subunit LpfA | VF |
| SG48_RS22430 () | 4536113..4536838 | + | 726 | WP_000066547.1 | Chaperone protein FimC | VF |
| SG48_RS22435 () | 4536905..4539541 | + | 2637 | WP_000121005.1 | fimbrial usher FimD | - |
| SG48_RS22440 () | 4539551..4540081 | + | 531 | WP_001244827.1 | type 1 fimbria minor subunit FimF | - |
| SG48_RS22445 () | 4540094..4540597 | + | 504 | WP_000870592.1 | type 1 fimbria minor subunit FimG | - |
| SG48_RS22450 () | 4540617..4541519 | + | 903 | WP_000832247.1 | type 1 fimbria D-mannose specific adhesin FimH | - |
Similar MGE(s)
Similar MGE(s) is defined as other TA-related MGE(s) with Mash distance < 0.01 to this MGE.
| Detail | Organism | MGE type | Related TA | Genome accession | Coordinates | Mash distance |
|---|---|---|---|---|---|---|
| Escherichia coli str. K-12 substr. MC4100 | Genomic island | TA20089 | HG738867 | 4419085..4430625 | 0.004 | |
| Escherichia coli str. K-12 substr. MG1655 | Genomic island | TA6279 | NC_000913 | 4533239..4545029 | 0 | |
| Escherichia coli str. K-12 substr. W3110 | Genomic island | TA21460 | NC_007779 | 4537919..4549709 | 0 | |
| Escherichia coli BW2952 | Genomic island | TA23876 | NC_012759 | 4469997..4481537 | 0.004 | |
| Escherichia coli DH1 | Genomic island | TA27426 | NC_017638 | 4513009..4524807 | 0 | |
| Escherichia coli BW25113 | Genomic island | TA48705 | NZ_CP009273 | 4523056..4534846 | 0 | |
| Escherichia coli str. K-12 substr. W3110 strain K-12 substr. ZK126 | Genomic island | TA68445 | NZ_CP017979 | 4432698..4444488 | 0 | |
| Escherichia coli str. K-12 substr. MC4100 strain K-12 | Genomic island | TA285034 | NZ_HG738867 | 4419085..4430625 | 0.004 |