MGE detailed information
MGE type: Genomic_island MGE length: 11030 bp
Accession: NZ_CP126928 Location: 4139608..4150637 Organism: Escherichia coli O2:K1:H4 strain APEC E12053 Replicon: chromosome
Accession: NZ_CP126928 Location: 4139608..4150637 Organism: Escherichia coli O2:K1:H4 strain APEC E12053 Replicon: chromosome
Gene structure
The 5 kb flanking regions of this MGE are displayed.
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| QQA27_RS20280 (4135087) | 4135087..4135590 | - | 504 | WP_000870592.1 | type 1 fimbria minor subunit FimG | - |
| QQA27_RS20285 (4135603) | 4135603..4136133 | - | 531 | WP_001244827.1 | type 1 fimbria minor subunit FimF | - |
| QQA27_RS20290 (4136143) | 4136143..4138779 | - | 2637 | WP_000121002.1 | fimbrial usher FimD | - |
| QQA27_RS20295 (4138846) | 4138846..4139571 | - | 726 | WP_000066560.1 | type 1 fimbria chaperone FimC | - |
| QQA27_RS20300 (4139608) | 4139608..4140147 | - | 540 | WP_000824114.1 | putative major fimbrial subunit LpfA | VF |
| QQA27_RS20305 (4140212) | 4140212..4140760 | - | 549 | WP_000695592.1 | Type-1 fimbrial protein, A chain | VF |
| QQA27_RS20310 (4141243) | 4141243..4141839 | - | 597 | WP_000044711.1 | ISKra4 family transposase ISCep1 | VF |
| QQA27_RS20315 (4142317) | 4142317..4142919 | - | 603 | WP_000790583.1 | ISKra4 family transposase ISCep1 | VF |
| QQA27_RS20320 (4144375) | 4144375..4145091 | + | 717 | WP_001295734.1 | N-acetylneuraminic acid outer membrane channel NanC | - |
| QQA27_RS20325 (4145111) | 4145111..4146217 | + | 1107 | WP_001309184.1 | N-acetylneuraminate epimerase | - |
| QQA27_RS20330 (4146282) | 4146282..4147262 | + | 981 | WP_000991438.1 | 9-O-acetyl-N-acetylneuraminic acid deacetylase | - |
| QQA27_RS20335 (4147372) | 4147372..4147577 | + | 206 | Protein_3980 | HNH endonuclease | - |
| QQA27_RS20340 (4147845) | 4147845..4149085 | - | 1241 | Protein_3981 | helicase YjhR | - |
| QQA27_RS20345 (4149201) | 4149201..4149332 | + | 132 | WP_001309182.1 | hypothetical protein | - |
| QQA27_RS20350 (4149823) | 4149823..4150080 | + | 258 | WP_001054376.1 | YjhX family toxin | Toxin Detail |
| QQA27_RS20355 (4150092) | 4150092..4150637 | + | 546 | WP_001350781.1 | N-acetyltransferase | Antitoxin Detail |
| QQA27_RS20360 (4150693) | 4150693..4151439 | + | 747 | WP_000354251.1 | class I SAM-dependent methyltransferase | - |
| QQA27_RS20365 (4151608) | 4151608..4151826 | + | 219 | Protein_3986 | hypothetical protein | - |
| QQA27_RS20370 (4151864) | 4151864..4151980 | + | 117 | Protein_3987 | VOC family protein | - |
| QQA27_RS20375 (4152225) | 4152225..4153082 | + | 858 | Protein_3988 | M42 family peptidase | - |
| QQA27_RS20385 (4154391) | 4154391..4154891 | + | 501 | Protein_3990 | GTPase family protein | - |
Similar MGE(s)
Similar MGE(s) is defined as other TA-related MGE(s) with Mash distance < 0.01 to this MGE.
| Detail | Organism | MGE type | Related TA | Genome accession | Coordinates | Mash distance |
|---|---|---|---|---|---|---|
| Escherichia coli str. K-12 substr. MC4100 | Genomic island | TA20089 | HG738867 | 4419085..4430625 | 0.007 | |
| Escherichia coli str. K-12 substr. MG1655 | Genomic island | TA6279 | NC_000913 | 4533239..4545029 | 0.002 | |
| Escherichia coli str. K-12 substr. W3110 | Genomic island | TA21460 | NC_007779 | 4537919..4549709 | 0.002 | |
| Escherichia coli BW2952 | Genomic island | TA23876 | NC_012759 | 4469997..4481537 | 0.007 | |
| Escherichia coli DH1 | Genomic island | TA27426 | NC_017638 | 4513009..4524807 | 0.003 | |
| Escherichia coli BW25113 | Genomic island | TA48705 | NZ_CP009273 | 4523056..4534846 | 0.002 | |
| Escherichia coli str. K-12 substr. W3110 strain K-12 substr. ZK126 | Genomic island | TA68445 | NZ_CP017979 | 4432698..4444488 | 0.002 | |
| Escherichia coli str. K-12 substr. MC4100 strain K-12 | Genomic island | TA285034 | NZ_HG738867 | 4419085..4430625 | 0.007 |