MGE detailed information
MGE type: Genomic_island MGE length: 11791 bp
Accession: NZ_CP116191 Location: 574487..586277 Organism: Escherichia coli strain DETEC-E1070 Replicon: chromosome
Accession: NZ_CP116191 Location: 574487..586277 Organism: Escherichia coli strain DETEC-E1070 Replicon: chromosome
Gene structure
The 5 kb flanking regions of this MGE are displayed.
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| PIC72_RS02735 (570178) | 570178..571491 | - | 1314 | WP_000460843.1 | PTS sugar transporter subunit IIC SgcC | - |
| PIC72_RS02740 (571503) | 571503..571781 | - | 279 | WP_000722973.1 | PTS sugar transporter subunit IIB SgcB | - |
| PIC72_RS02745 (571778) | 571778..572899 | - | 1122 | WP_000010829.1 | M42 family metallopeptidase | - |
| PIC72_RS02750 (573144) | 573144..573260 | - | 117 | Protein_532 | VOC family protein | - |
| PIC72_RS02755 (573298) | 573298..573516 | - | 219 | Protein_533 | hypothetical protein | - |
| PIC72_RS02760 (573685) | 573685..574431 | - | 747 | WP_000354251.1 | class I SAM-dependent methyltransferase | - |
| PIC72_RS02765 (574487) | 574487..575032 | - | 546 | WP_001540600.1 | N-acetyltransferase | Antitoxin Detail |
| PIC72_RS02770 (575044) | 575044..575301 | - | 258 | WP_001054376.1 | YjhX family toxin | Toxin Detail |
| PIC72_RS02775 (575792) | 575792..575923 | - | 132 | WP_001309182.1 | hypothetical protein | - |
| PIC72_RS02780 (576039) | 576039..577279 | + | 1241 | Protein_538 | helicase YjhR | - |
| PIC72_RS02785 (577547) | 577547..577752 | - | 206 | Protein_539 | HNH endonuclease | - |
| PIC72_RS02790 (577862) | 577862..578842 | - | 981 | WP_000991438.1 | 9-O-acetyl-N-acetylneuraminic acid deacetylase | - |
| PIC72_RS02795 (578907) | 578907..580013 | - | 1107 | WP_001774143.1 | N-acetylneuraminate epimerase | - |
| PIC72_RS02800 (580033) | 580033..580749 | - | 717 | WP_001295734.1 | N-acetylneuraminic acid outer membrane channel NanC | - |
| PIC72_RS02805 (582205) | 582205..582807 | + | 603 | WP_000790583.1 | ISKra4 family transposase ISCep1 | VF |
| PIC72_RS02810 (583285) | 583285..583881 | + | 597 | WP_000044711.1 | ISKra4 family transposase ISCep1 | VF |
| PIC72_RS02815 (584363) | 584363..584911 | + | 549 | WP_001774144.1 | Type-1 fimbrial protein, A chain | VF |
| PIC72_RS02820 (584976) | 584976..585515 | + | 540 | WP_000824114.1 | putative major fimbrial subunit LpfA | VF |
| PIC72_RS02825 (585552) | 585552..586277 | + | 726 | WP_000066560.1 | Chaperone protein FimC | VF |
| PIC72_RS02830 (586344) | 586344..588980 | + | 2637 | WP_000121002.1 | fimbrial usher FimD | - |
| PIC72_RS02835 (588990) | 588990..589520 | + | 531 | WP_001244827.1 | type 1 fimbria minor subunit FimF | - |
| PIC72_RS02840 (589533) | 589533..590036 | + | 504 | WP_000870592.1 | type 1 fimbria minor subunit FimG | - |
| PIC72_RS02845 (590056) | 590056..590958 | + | 903 | WP_001774145.1 | type 1 fimbria D-mannose specific adhesin FimH | - |
Similar MGE(s)
Similar MGE(s) is defined as other TA-related MGE(s) with Mash distance < 0.01 to this MGE.
| Detail | Organism | MGE type | Related TA | Genome accession | Coordinates | Mash distance |
|---|---|---|---|---|---|---|
| Escherichia coli str. K-12 substr. MC4100 | Genomic island | TA20089 | HG738867 | 4419085..4430625 | 0.005 | |
| Escherichia coli str. K-12 substr. MG1655 | Genomic island | TA6279 | NC_000913 | 4533239..4545029 | 0.001 | |
| Escherichia coli str. K-12 substr. W3110 | Genomic island | TA21460 | NC_007779 | 4537919..4549709 | 0.001 | |
| Escherichia coli BW2952 | Genomic island | TA23876 | NC_012759 | 4469997..4481537 | 0.005 | |
| Escherichia coli DH1 | Genomic island | TA27426 | NC_017638 | 4513009..4524807 | 0.001 | |
| Escherichia coli BW25113 | Genomic island | TA48705 | NZ_CP009273 | 4523056..4534846 | 0.001 | |
| Escherichia coli str. K-12 substr. W3110 strain K-12 substr. ZK126 | Genomic island | TA68445 | NZ_CP017979 | 4432698..4444488 | 0.001 | |
| Escherichia coli str. K-12 substr. MC4100 strain K-12 | Genomic island | TA285034 | NZ_HG738867 | 4419085..4430625 | 0.005 |