MGE detailed information
MGE type: Genomic_island MGE length: 11791 bp
Accession: NZ_CP122316 Location: 2863259..2875049 Organism: Escherichia coli strain HT-946 Replicon: chromosome
Accession: NZ_CP122316 Location: 2863259..2875049 Organism: Escherichia coli strain HT-946 Replicon: chromosome
Gene structure
The 5 kb flanking regions of this MGE are displayed.
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| QCG48_RS14275 (2858950) | 2858950..2860263 | - | 1314 | WP_000460843.1 | PTS sugar transporter subunit IIC SgcC | - |
| QCG48_RS14280 (2860275) | 2860275..2860553 | - | 279 | WP_000722973.1 | PTS sugar transporter subunit IIB SgcB | - |
| QCG48_RS14285 (2860550) | 2860550..2861671 | - | 1122 | WP_000010829.1 | M42 family metallopeptidase | - |
| QCG48_RS14290 (2861916) | 2861916..2862032 | - | 117 | Protein_2785 | VOC family protein | - |
| QCG48_RS14295 (2862070) | 2862070..2862288 | - | 219 | Protein_2786 | hypothetical protein | - |
| QCG48_RS14300 (2862457) | 2862457..2863203 | - | 747 | WP_000354251.1 | class I SAM-dependent methyltransferase | - |
| QCG48_RS14305 (2863259) | 2863259..2863804 | - | 546 | WP_001309181.1 | N-acetyltransferase | Antitoxin Detail |
| QCG48_RS14310 (2863816) | 2863816..2864073 | - | 258 | WP_001054376.1 | YjhX family toxin | Toxin Detail |
| QCG48_RS14315 (2864564) | 2864564..2864695 | - | 132 | WP_001309182.1 | hypothetical protein | - |
| QCG48_RS14320 (2864811) | 2864811..2866051 | + | 1241 | Protein_2791 | helicase YjhR | - |
| QCG48_RS14325 (2866319) | 2866319..2866524 | - | 206 | Protein_2792 | HNH endonuclease | - |
| QCG48_RS14330 (2866634) | 2866634..2867614 | - | 981 | WP_000991438.1 | 9-O-acetyl-N-acetylneuraminic acid deacetylase | - |
| QCG48_RS14335 (2867679) | 2867679..2868785 | - | 1107 | WP_001309184.1 | N-acetylneuraminate epimerase | - |
| QCG48_RS14340 (2868805) | 2868805..2869521 | - | 717 | WP_001295734.1 | N-acetylneuraminic acid outer membrane channel NanC | - |
| QCG48_RS14345 (2870977) | 2870977..2871579 | + | 603 | WP_000790583.1 | ISKra4 family transposase ISCep1 | VF |
| QCG48_RS14350 (2872057) | 2872057..2872653 | + | 597 | WP_000044711.1 | ISKra4 family transposase ISCep1 | VF |
| QCG48_RS14355 (2873135) | 2873135..2873683 | + | 549 | WP_000695564.1 | Type-1 fimbrial protein, A chain | VF |
| QCG48_RS14360 (2873748) | 2873748..2874287 | + | 540 | WP_000824114.1 | putative major fimbrial subunit LpfA | VF |
| QCG48_RS14365 (2874324) | 2874324..2875049 | + | 726 | WP_000066547.1 | Chaperone protein FimC | VF |
| QCG48_RS14370 (2875116) | 2875116..2877752 | + | 2637 | WP_000121005.1 | fimbrial usher FimD | - |
| QCG48_RS14375 (2877762) | 2877762..2878292 | + | 531 | WP_001244827.1 | type 1 fimbria minor subunit FimF | - |
| QCG48_RS14380 (2878305) | 2878305..2878808 | + | 504 | WP_000870592.1 | type 1 fimbria minor subunit FimG | - |
| QCG48_RS14385 (2878828) | 2878828..2879730 | + | 903 | WP_000832247.1 | type 1 fimbria D-mannose specific adhesin FimH | - |
Similar MGE(s)
Similar MGE(s) is defined as other TA-related MGE(s) with Mash distance < 0.01 to this MGE.
| Detail | Organism | MGE type | Related TA | Genome accession | Coordinates | Mash distance |
|---|---|---|---|---|---|---|
| Escherichia coli str. K-12 substr. MC4100 | Genomic island | TA20089 | HG738867 | 4419085..4430625 | 0.004 | |
| Escherichia coli str. K-12 substr. MG1655 | Genomic island | TA6279 | NC_000913 | 4533239..4545029 | 0 | |
| Escherichia coli str. K-12 substr. W3110 | Genomic island | TA21460 | NC_007779 | 4537919..4549709 | 0 | |
| Escherichia coli BW2952 | Genomic island | TA23876 | NC_012759 | 4469997..4481537 | 0.004 | |
| Escherichia coli DH1 | Genomic island | TA27426 | NC_017638 | 4513009..4524807 | 0 | |
| Escherichia coli BW25113 | Genomic island | TA48705 | NZ_CP009273 | 4523056..4534846 | 0 | |
| Escherichia coli str. K-12 substr. W3110 strain K-12 substr. ZK126 | Genomic island | TA68445 | NZ_CP017979 | 4432698..4444488 | 0 | |
| Escherichia coli str. K-12 substr. MC4100 strain K-12 | Genomic island | TA285034 | NZ_HG738867 | 4419085..4430625 | 0.004 |