MGE detailed information
MGE type: Genomic_island MGE length: 12990 bp
Accession: NZ_CP028703 Location: 781226..794215 Organism: Escherichia coli strain ME8067 Replicon: chromosome
Accession: NZ_CP028703 Location: 781226..794215 Organism: Escherichia coli strain ME8067 Replicon: chromosome
Gene structure
The 5 kb flanking regions of this MGE are displayed.
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| DBB47_RS04000 () | 776917..778230 | - | 1314 | WP_000460843.1 | galactitol-specific PTS transporter subunit IIC | - |
| DBB47_RS04005 () | 778242..778520 | - | 279 | WP_000722973.1 | PTS sugar transporter subunit IIB | - |
| DBB47_RS04010 () | 778517..779638 | - | 1122 | WP_000010829.1 | M42 family metallopeptidase | - |
| DBB47_RS24055 () | 779883..779999 | - | 117 | Protein_733 | VOC family protein | - |
| DBB47_RS04015 () | 780037..780255 | - | 219 | Protein_734 | hypothetical protein | - |
| DBB47_RS04020 () | 780424..781170 | - | 747 | WP_000354251.1 | class I SAM-dependent methyltransferase | - |
| DBB47_RS04025 () | 781226..781771 | - | 546 | WP_001309181.1 | N-acetyltransferase | Antitoxin Detail |
| DBB47_RS04030 () | 781783..782040 | - | 258 | WP_001054376.1 | hypothetical protein | Toxin Detail |
| DBB47_RS04040 () | 782417..782662 | - | 246 | Protein_738 | GNAT family N-acetyltransferase | - |
| DBB47_RS04050 () | 782778..784018 | + | 1241 | Protein_739 | helicase YjhR | - |
| DBB47_RS04055 () | 784601..785581 | - | 981 | WP_000991438.1 | 9-O-acetyl-N-acetylneuraminic acid deacetylase | - |
| DBB47_RS04060 () | 785646..786752 | - | 1107 | WP_001309184.1 | N-acetylneuraminate epimerase | - |
| DBB47_RS04065 () | 786772..787488 | - | 717 | WP_001295734.1 | N-acetylneuraminic acid outer membrane channel NanC | - |
| DBB47_RS04080 () | 788944..789546 | + | 603 | WP_000790583.1 | Tyrosine recombinase XerC | VF |
| DBB47_RS04090 () | 790079..791059 | + | 981 | WP_000019403.1 | IS5 family transposase IS5D | Transposase |
| DBB47_RS04100 () | 791223..791819 | + | 597 | WP_000044711.1 | Tyrosine recombinase XerD | VF |
| DBB47_RS04110 () | 792301..792849 | + | 549 | WP_108118566.1 | Type-1 fimbrial protein, A chain | VF |
| DBB47_RS04115 () | 792914..793453 | + | 540 | WP_000824114.1 | putative major fimbrial subunit LpfA | VF |
| DBB47_RS04120 () | 793490..794215 | + | 726 | WP_000066547.1 | Chaperone protein FimC | VF |
| DBB47_RS04125 () | 794282..796918 | + | 2637 | WP_000121005.1 | fimbrial usher FimD | - |
| DBB47_RS04130 () | 796928..797458 | + | 531 | WP_001244827.1 | type 1 fimbria minor subunit FimF | - |
| DBB47_RS04135 () | 797471..797974 | + | 504 | WP_000870592.1 | type 1 fimbria minor subunit FimG | - |
| DBB47_RS04140 () | 797994..798917 | + | 924 | WP_108118567.1 | type 1 fimbria D-mannose specific adhesin FimH | - |
Similar MGE(s)
Similar MGE(s) is defined as other TA-related MGE(s) with Mash distance < 0.01 to this MGE.
| Detail | Organism | MGE type | Related TA | Genome accession | Coordinates | Mash distance |
|---|---|---|---|---|---|---|
| Escherichia coli str. K-12 substr. MC4100 | Genomic island | TA20089 | HG738867 | 4419085..4430625 | 0.007 | |
| Escherichia coli str. K-12 substr. MG1655 | Genomic island | TA6279 | NC_000913 | 4533239..4545029 | 0.003 | |
| Escherichia coli str. K-12 substr. W3110 | Genomic island | TA21460 | NC_007779 | 4537919..4549709 | 0.003 | |
| Escherichia coli BW2952 | Genomic island | TA23876 | NC_012759 | 4469997..4481537 | 0.007 | |
| Escherichia coli DH1 | Genomic island | TA27426 | NC_017638 | 4513009..4524807 | 0.003 | |
| Escherichia coli BW25113 | Genomic island | TA48705 | NZ_CP009273 | 4523056..4534846 | 0.003 | |
| Escherichia coli str. K-12 substr. W3110 strain K-12 substr. ZK126 | Genomic island | TA68445 | NZ_CP017979 | 4432698..4444488 | 0.003 | |
| Escherichia coli str. K-12 substr. MC4100 strain K-12 | Genomic island | TA285034 | NZ_HG738867 | 4419085..4430625 | 0.007 |